morexGenes - Barley RNA-seq Database

Contig contig_241088
Source Contig contig_241088
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_241088 (9593 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_241088

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_33875	3	1776 bp	AK367213	Available	Available	None
MLOC_33876	4	2458 bp	MLOC_33876.4	Available	Available	LOC_Os03g11540.1, FRAME:-3, EVALUE:0.0, 13103.m01302 protein RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed
CDS Structure of MLOC_33875

CDS Structure of MLOC_33876

Contig Sequence (9593 bp)

>contig_241088 9593 assembly3_WGSMorex_rbca.fasta
CTCCTGTACAGAACCAGCGACCCAAGAAAGGGCTAGCCCGCACGCCGAACAGGGGAGGAG
GGGATGAGCCAGATCACGTGCACCGGCCACCGCAGAAGCCGCCGCCGGCCGCCAACGACC
ACCGGATCCTGCCGCCCGCGCTACCGGGATGCCAGATCCACCGCCCGCACGGCTGCTAGC
CTTCCATGCCTCGCCCATGGAGCGGTCGCTCCAGATCCGGGGTTCCCCACGCAGAGGCAG
GGCAGCCAAGGCCCCGCCGCCACGATCCTTGGCGCCCCGGGCTTGCCCCATCAATACCGT
GCTCATTGTGTTTGTATCCTCTTGATGCTCCATTTTGAGCCAATAAAATCCACCCTTTAT
AAAAAAAATGACCATCAATACTATCAAGTGTTTTCTTTCTTTTTTTGTACAGGATGTGTT
TGTAAGGACCTGTAATACATAATATGTGACCTTAGGCCTTCCCAAAAAAACAAAAACAAA
AAGAGAACACAGAGATCGTGAAATAATGTTACCAAACAAATCCAGTTTAACACATCATCT
TGCCATATATAAAGTACTATTAGTTTAAGCAAGCGTGCATTACTTCGAGGATGTTCTGAC
GATGTATTTTCATTTTGCATGCAATACTGCAGGTACCATCACGAGGACAAGTTCACTCCC
TGCTGGCATTGAGGATGGGTGGAGGAAGAGGAAGTTAGCCCACACTCTCGAAAAGCTCGG
GATGAAGAGGAGGATCGAGACGATGAACTCTTCCAACGTTTCTGGAGAGGACATTGGAGA
GAAAGTAGAAAATTACGATGATCCTTCTATGAAGAGTGAGCAGGCAGGAGGAATGCCAAA
AGTACAAAGAATGAACCATAGCAATGTCAGGCGTCGCTCAAGTGGGCTTCCTCCACCATA
TCAGCCTCCGGCTGCATCACAACGTAGCTGCTTGCCAGGGAATCCAAGAAGGCAAAACTC
AGCTTTGAAAGGTAAAGTAATTTGCTATATTGCATTATTAAGCTTTGAAAGGCTGCATCA
CAAGGTATTTTGCCATATTGCATTATTATGCTAGAGTGTCATATATGCCAACATAAAAAA
AAAAGTATTTGGTATTTTGATTTGACAATGCTATGTTCCTACTTCCATGCTTAGATCCTT
GTGTTACTCCTTCAAATATTATGCCAGTTTAATCATGTAGTTATCTGGATATCTTTAAGG
TACTTGGCTTTGTCGTCTGAACTACCAAGCCAACTAACATACACCCACCAAATTAAGTTG
TGGCTTGGATTCATCCTGACCTCTGGACCAAAACCATGCAGTTACAGTATTTGTCCTATT
GGGCATGTCCTTGAACAGGAACTGCAAGGATGCCAATAATTGACTATGCTAACTAATCCT
TGTTATAAAACAACTACTGATAGATTCGGACTGTTCTATACATGCTGTTGTTCAGTAGCA
GTTGGTTCGTATTTCAGTGTTCCTACCTTCTATCAGATTTACATCTGTTGATCCCTAATC
TTTACAGGAACTCCTGGCGCTCCTGAGCGGAGCCTGTCATCGGCTGTTCTGCCCTCGTCT
GAGGGTGCAAAGAGCACTGCCGTGACAACCTCTTCATCTTCAGCATCGGCGGTGAGAGCA
GCATCCCTTGTCATCTCCAAAGGAGAGCAGCAAGATGGTTCAGAAAGGACCGCTGCAAGA
GCGAGTGCGGCAGACATGATGGTGCGGAAGATGCCACCGGTGTACACCAGTGGGCTCCCC
AACTGCGAGAGGATCGACGGCTTCCTGTACCAGTACAGCAGAGTTGACGAGGTGAGGATT
GTGTGCGTGTGCCATGGTAGTTTCCTGACTCCGACGGAGTTTGTGGCGCATGCTGGAGGC
GGCAAAGTCGCCAACCCGATGAGGCACATCGTCGTCAACCCCCCGTCTTCGCTTTAGACC
GGCGCGTGCATGCAGGTCGAGCAAGTGCTCCGTGTGTGGCTTCAGCAGCCCTAAGCTTAG
CTTGGAATTAGAAATCTCATCGTGAGACTGCATTTTATGTTTTACAGACTTTTACATCAC
AGTGCTTATTATCCTGAACTGAAGACATGGTGGGAGATTTGCTCCTGCAGACAACTAAAT
AGCAAACATATGACAGGTTGAACATTACCCTCTTGTCGTCACTTGTTTCCTGCTGTTGCT
GTCGTTGTCGTCTTAGGACCAAAGGTCTGCGGTTATGATCTTGTAGATACAAGTAGCAGC
TTGTTGGTGGCAACCAGCCCGCTGCAGCAAATTTCATGAACCAGCGACTGGTCAGTTGTT
GGTGGCAACCAGGCCGCTGCAGCAAATTTCATGAACCAGCGACTGGTCAGTTGTTGGTGG
CTTCTCAAAGCTACCAGCAAACCAGTCACTAGTGATGGAGCACCAGTTTCATGGAGGTCA
GTAGCTAACCATGTACACACCCTACAAGTGATGGTCTTCAGTCACATCTTCAGAGCCAGT
GGCTTACTAATATAGAATACTTTGTTAGCCTGGTCACCACTCATGATGGCGACTGATCCT
AGTGGCTGGCTTCTCTGGTGATGGGACACCTGTTTCATCTTCAAGTCAGTAGCTTACCAT
GTACTCCCTCCGTCCTGTCCCAAAATAAGTGCCTTGGCTTTCAAATTTGAACAAATTTGA
ACTAAAGCTAAGACACTTATTTTGAGACACAAAGAATACACAGCACCCAGTCACAAGTGG
ACAAGTGATGGAACATCTTAGGCCCAGTTCTTTTGCCAAAATCTCAGGATTCTTCCAGAA
TCCGACCCCTCCCAGAATCTTTGACCGAGAATCCCCACATTCTGTCAAAAGGACTGGGCC
TTAGTGGCATCTTCTGAGTTAGTAGTAGCTTCCCATAGAGTACATTGTTGGTCTGGTATA
GATCTTCAGGGAGGATTGATGGGGGTTATCCCGTACAAGTCAAAATCCTCCCCCAAAACA
TTCCCAGGGCACAGATAAAGATGTGACTAAGCACTTGCCCAACCCACTAATACTAATCTA
GTGTAGCCACCAGGAGCACTTGCTCAGAACATATGTTCAACGTCAACTAGCAGTGGATTT
GCATCCTTGGTCATATGGAGAAGGAATTTGCAGATCAAACAGATGGAACAGAGCAAGATT
ACCCTTATGTGCTCCGAATCGAACGTCTACGTATATAACACAGGACAGCAAAAGCGTTAA
GTTAACACTACATTTGAGGAGCGACATGGCAGAAAGACACGGCTGAAGCAGCAAACTTGG
GCCAAAACATGGCTTCATCTAGCAAAGCTATGAGAGCTTGGATATCTATCTCCTCAAGGG
GAGCAGGCATTATCTTGCATCTTCTCTTCTCCCAGCAGGGGGCGGTGAACTTGGAAATCT
CCTTCAGTGGAGCAGGCATTCTCCTCTTGCATCTTCTAGCTGGAGGTGAGCCTGGCGATC
TCCTCAAGCTGGTACCTCGCTTCAGCAGCAAAGTCAACCGGCGACTCGCTCCTCACGGTG
ATCCTCTGCCTCTTCTCGCCCATGTACTCGTTCTGCGCAACGCTGACACGGAACAGGTGG
GGAACCCAGGTGGCTTCCTTCAGCTTGAGCTGGAACATGTCATCGCCCTCCTGCAAACAG
AATTTGACAAATCTTAGATACAAATCATAAATCAAACAAGACTGCATTTTGACTGGCGAG
GCATGAGTTTTTTACCTCTTTTCTGATCCGATCAAGATTATCTGCACTGCAGCCGACAAT
CCTCTCTGCTTGGTCATTGAAAAGGGACAGCCAGGCCTCACCTGTTGGATCAGAGACCTT
GATCACCATGATGTACCTGAAGAGCAAACAAGACACGCTCAGCATTGGCTTTTCATGGAT
AATTGGGTGACAGTAGGACGTGTTTACTTCAAACAAGTAGGATTATTACCTCAACGAGCA
CTCCTCATAGTTCTTCTGGCACCCTTCACACCAGTATCCTGATCCGAGTGCCTCGGTCAC
CTTCTTGTTGCAGGTGGTGCAAGCGCGGTACCACATGGTCTGGTCAGGCTTGATGTGGCT
TATGTTGGCACACAGGCTGAAGAAAACAGGCTGCAAAACAAATCGGGTCAGATTACTTAA
GGCAACTGCAAGCTTACAACCATGAATTGTTCAGATTGAGATGGACTTTGTACGGCTAAC
AAACATCCAAAGCCTTACCTTATCCTGGCCCAAGTTAGGGTCACTTGTGATGTGAGACAG
AAAAACTCTGTCAGAGTACATTGATCTCAAACCACCAGCGCTGGATGCACCCATTCCAGC
ACCAACTGATGCCAAGGAAGTACCCTTGCCTTCAGATTCATACCTGTTCGGCAAACAATG
TGGTCATGATCTATCACAGGTAAGGCTAATTAAATGAAGAAGCGTTTAGTATCAGGGCCT
TACCAGGCTCTAAGCTTCTCAGTCTCAGGCAACTCTGGGTTAATAACAAGTGTACTCTTG
CCTACTGTAGAGACAGACACGCCTGGTAGAGAAATTTAGCAGCAAACTATTAGCACAAAC
AAACAACTCATGACTGTCCAGAAAACAGTTGGTTGGAAGGGTATCAAGAACATACCTTGA
AAGTCAGATACTTTCAGGCTCTTGATTGCAACGATAGGTGCAGAGTCAACCATGTCCAAC
AGCTCTTCACCAAGAGTGGTGGCAAGATCATTCCAAAGAGAAACTGTGACGGTCTTGTTT
CTGCAATCAAATTAGATGTAAATCAGAAGAATGCACCACGTTTCTAGCTACAATATCATA
TAAACCACATTTTAAGCTATCAGCAAGCTAAGTTGCACTTACGAGTCATCTGCAACAACA
ATGTCACGCTTTGGAATTGACTCATTGTCGATCTTCCTTCTGATACTCAGAGTAGGTGAT
ACACTCTGAACAACACCAATGATATCTACAGACAAGAAATGGAACAGAGTAAAATTAGCC
AGGCTGGATGCTAGAAGGTAATAATATACTGTAGTTCACTGCCAGGCTGGATGCTATAAG
GTAATAATATACTGTAGTTCACTGAATTTAAGCAATTCGGCCTCACCTACTAACTCCCTG
CCACCAACATATGGCCCCAGCATATCAATCTTAACAAAGTTGTATTGCACTGGTGGAATG
AAAGATTCCCCCTCAGCTTCTTCAACAACAGCATTCTCATTCAGGGTCATCTCATAGTCA
TTCTGGACCGTCTTGAACTGCTTGTTTGCAATTCTCAGCGACCCCTTGGAGATGTAGTAG
ACCTTCCCAAGCTCAAACACGGGATAGAACTTCTTTGCAGGCTCGTTGAACATGGTGGCC
TGGATTTGGGTGCCCTGTATTATACAGATCAAGCAATGCCAGCTTACAGTTAAAACTTGG
TTCGGCAAATGCATGCATGAATGAAAGCGCTACATTGTCAGGGGAACTTACATCCTCGTC
AGTGAGCTCTACGTTGAAGACATGGCCTTCTCCACGGGCATTCCTGTATGACCTGAGGTT
GCCCTTGCTTGTGACCCGCACCTTGATGACCCAATTCCCCTGGTAGGGGTTCAGGGAGAT
CAGAGGATGGACCCGCCTGGTCATGGCCAAGCGAGCAGCGGGAGCAGCACTGCAGATACA
GAAGTTACAAGAGTTAGCAGCGATTCTTCAGAGACTTCCGCAAGCGAAACAGTAGAGTAA
GGATGCTGTTATGCAAGAAGAGCTTACTTTCCACGCTGCTCGCTAACAATCTGGGACGCG
GACTTCACGTCGTGCCTGGGCTTCAGCATAATCGAATCCGGGGACGCACCATTGGGCTTG
GAGATAACCGCATCCTCCTCCTTGGGCTTCATGAGAACGGATGGCTCTTCCATCTTGACC
TCGCTCTTGATCTCGGCGTCAAGCGCCTGGGACACGACCTCGCACTTGGTGACGATCACC
ATCCTGCCGTACAGCGTACAGAGCACGGTGTTCAGTGAAGGATGAAACGGATCTATAAGA
TGGCCGGAGGGGGGTGGAGATTTTACTTACTTGTCCGACTTATTTGGGATGTCGTTGCAT
GTGTAGTTGAGGATGCGGACGAGGCCGAGGTTCTGGAGTCTGCCGGACTGGACCTCCGAC
GCGAAGTGGGAGGAGAGGATCGCCTTGACCTTCGCCTCCCCGTCGCTAGCCATGAAACTG
CAAGGCAACAAGAACAGTCCGTCAGGGTCACGGGTCATATACAGGGGGAATCGGCGCTAA
GAAGAACAGATCTGCGGCGGCACGGAGCAAAACGCAGAGATCTAGACATATTCTGAAGAC
CAAACGAGCGATTTCGCGTGGTCCGGTATGAGCGGAACGGACGGATAGATCCGGCGACAG
GATACGAGGGAGGGGGGAGGAGGGAGAGCACTCACGCGAAGCGGGAGCCGATGGGCTTGA
GGTCGACGACCTGCACGACGATCTCCGGCACGTCGGCGGCGGACTCCGGCGTGGGGTTGG
CGAGGATGAGGGCCACGGCGCCCGGCGTCACCGACTTGGCGTCCATGCCTCTCGTCTCCG
GCGGGGTTTCGCGCGCCTTCCGGAGGAAGATTTCGTGGGCGGTGGTGAAGGTGGGCAGCG
GCGGCGGAAATGGTTTGGAGTTGGGAGAGGGGATGGGGTTTGGATTTGGAGTTGGGAGAG
GGGATGGGGTTTGGATTTGGAGTTGGGAGAGGGGATGCGATCCGCGCGCTGGTTATAAGG
TGCGTTTGAGGGGGAAATTGGCGGGCGGGGGCTTCTGGCTCCTGCGAATTGCCGCGGGTT
TCTGTCAACGGCGGGAGGCGCGCGGATGGTTTTTCTTTTTTTGGCTCACGTTTCGGTGGC
TCTGGCGGGAAAATTTTGAGGGGAGTTTTCGCGCCGGGAGCGAGCGGGCGGGGGGAGAGA
GAGCGGGTGTTAGCGGTGTGGTGGTGCCGCTTTCTCGGCCTAGCTGGGTCGAGAGGAGGA
CTTTGGGGCCCAACATCGAGACGAGCCACACGTGATTTTTTTTGTTTTTGAATTCGGAAG
TGTGTGTGATACGATTCAGGGGGAAATACTGTGTGCACTGGCCGTGGGAGGAGGAAATAC
TGATTTTTTATTAAAAAGAAATATATTAATATCGCAAACATGTCAATTACGTTCAGCTTT
TACAACAACAAGATGTCTAAAGACATCAAGGTGACATCAAGGATGCACACGGACAAAAAA
AAGGACTCGTCGTGGTGATGACACTCGCAACGGTAGTACCCTAACCAACATCTGGACCAC
AAAATAGATTCTTCGAAAGCAACTTCCCAAAAAGAAAATAATGCATAAGGAGTGTCTTCG
CCCGATCGAAGATCTTGGGTTTTCACCTTGAAAAAAGTCTGAGTTCATAAAAAACAATGT
CTTTAACAAGGTCATTGCCACGTACAACCAATGAAGGCGAGACCTTGAATTTTCACTTTA
AAAATCTCGGCTCGGTGCTCAAAGAGCACCATCAAAAACGCAGTTCACCTGTGCTGCCAC
CCCATCTTGTCAAGGTTGTTGTTGCGGGTCACCAAATACGTGACACACAGGAAGGACATG
TGTCGCTAGTCTGCATCACGACCAAAACACCTCACTCACATTTCAAACCTCCCATGGCAA
CCATCATGACTTTCGTCATCTGTGTTAATACCATGGATATCTATATTTAGACATGTTACG
CGGCACTAACAAGAAAGTGAAGCTTCTCGCCACGCCCTCATGAAGCCTCGCTGCCCGAAG
ATAAGGGCGCCCACGACCGATTCGAATCTGATCTAGATATCCAGTGGCACCATGCGCCAG
TCAGCGGAAATCTCTAAGGGGAAGTCCGGAACTCGTCGACGTCCAGATAAGGAGGCCGAC
ATGAAGCATATCGACGACTTGGTGCTCGAAGATCAGGATGTCCAAACTGCCTTTAGATGC
AAGACCAGGAGGCCCCCACGTCACTAGTCATCTCCCTACCGGACTCGTCCTAGAGAAGAA
GGCAGACACGTGCTTCCGCACCGGCCCTGATCGGCCCTGAAGCCTAGATTGGGCTGTGAG
GCCCAAATCAGATTGGAGCACCACGTCCGTCGGTGGCATGCCAACACCTTCACGACGTCA
CTTGGTCTACATACCTCATGCCCCGACTATCAGTGCTAAAACTGACGGATCCCCAATAGG
GGGTCCCGAGTTGGTGGTCTCGACTAGATGGTAGTATGAACTAGAGAAATGCACTATGTT
TACCCAGGTGTGGGCCCTCCCTACGAGGTAAAACCCTAAGTAATGCTCTAATTACATTGA
TTGTGATGAGGTACGATGATGGGGATATGACCCCTGGGTATGCCAAAGTAGAGGAGTCCA
TGCTCCAAAACATTCAGGGTCGTTTGGCCCCTTTGGCCGCGTGGCCGCACGGGCGGTCGC
CCCCGTGGGTCAGGCGGTTGGCCAGAGGCCAGCTGTACACGGGTCCGCACGTTCGACCGA
CTGGCTACACGCACCCTTGATGGACAAAGCTTGGCTACACGACCCGTGACGAGGCAAGAC
ATGGCTACATGGGCGCAAGTACCGCCGACCTTGATCGGGCGGTCCGGCCTTGTAGCAGAC
GTGCACTACCTACTCCATGACGTTGATGCGTACTGGCCACAAGTGGCGAGCAGCCGGCGG
GCCTCGTGATAGGCTAGAGAGGTTAGGAGCCGAGGCTCGCACCCCTTTTACCCCCATATT
GTATTCATCTCGCTACACTATAAAGCCATCCCCCAGGTCCCATCAGACGAGTTTGATCCT
TTGCTCATGCACACACACACACACATGAGGCAATGATGTAGGTAGTGAGAGCTCATTCTT
CCTCCTCACAGAAAGCTCAAGGAGTATCATGTATTGTGATCATCCGTAGTCACTCTGGCA
TGACTAGGGGTTTTAGCTCCATCGGAGGGCCCTGAACCTCGTACGACTATGTCATGTGCT
TCGCACCCTCAGCCATCTTCAAACACCGTTGGTGCACATCAGCCCCAACCCACGACTTAA
GCCACCCCCTCGCATCTGTCGTAGAAATACCACGACAGTTGACGCCCACAGTGGGGCCGG
CAACCGCGCCGGTCGGAGTTGCGTTTTGGGTGGGGCCCTTGACCCACTCCAGCGCGCACA
TCACACACAACTTGGTTGTTCGTTTTGGTGCACTTCACTGCATCAAAGACAATGCTAGTC
GTTTCGAGGACACGAACTTCCCCAAGGAATGCTTCGTCATCCTCTTCGACGACCACCGTG
TCTACATCATGGTCGTCCCTAACGAGCACCCCTCGGAGGTGCTCAACTTTGACAAGCCGC
CACCAACTGGCGGCAACGACCTCTCCAGCGACATTGATGACCCTATGCGGACGTGTGGAG
GTAATGACCACTTCCTTCCTTGGCAAACCCCCGTTGTGTGTAGTGATGGGGACGTTGCAC
ACACCCATCACGCATGCGGCGACCCGACTACCACGACCCAGGAGTTGGGAGACCAGTGCC
AGCTGTAGGATCTGAAGTATGTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
TTAGCATTTTCCCAATTTTAGTCGTGGGCAAGTTTTAGCAATTGTAGCAAGTCAAGCACA
CCCTGCGCATGCAAGTCTAAGAGTATAGTAGCGGAAAGTAAATACATGCACAT