morexGenes - Barley RNA-seq Database

Contig contig_240982
Source Contig contig_240982
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_240982 (6875 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_240982

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_33861	1	3045 bp	MLOC_33861.1	Available	Available	LOC_Os11g40590.3, FRAME:+2, EVALUE:0.0, 13111.m04022 protein DUF1399 containing protein, putative, expressed
CDS Structure of MLOC_33861

Contig Sequence (6875 bp)

>contig_240982 6875 assembly3_WGSMorex_rbca.fasta
GGGGGGCGGGGGGGGCGGGCCGGTGGCGCGCCTGCAGGGAGGGCGGGAATCGCCGGCGGC
GGGCGGGCGAAAGCAAGGGCGGGGCGGCGGCTGAAGGAGGGGGAAAATAGCACGGACTGA
AATGTCCCTCCCGCCAACTGCTTCTCTTTGATGCAGGGCACCGCAGCCGCGAGGGGGAAA
CCCGCGTTTTCCCAGGTTGAGGTCGAGAATTTGCCGCGCTCCCTAAAATTTTTTACGGAC
CAGGACGAGATGTAGGGTCTGATCGGGCAGCTTTTTCGTCCCGACCCGCATTTTAACGCT
TATTTTGCGGGTCGAGGGCGGATGCGGGATCTGCTAGAGTTGCTCTTACTCAGCCGCATC
AACTACGTGTCCCCAATCCACTCTCCCCTCCCTCATTCCAATCGAAAAAAAAAATCCAAG
CGATCGATCTTCAGCTCCCGCGAACCTCCCCTCTCCGTCAAGGTACGCGCACGCCGCCGA
TTCCCTCTTCCCCCAAGCTACCCATATGTTCTTCCTGCGGGGTTGGTCCGCGGTCGTCGA
TTCAGTCAACGCTGCGAGGTATAGATGAGCTCGTAGAAACAGCATGTCGATTTCTGTCCG
TGTAGATTGCGCTATCCATGCTCTATACGGTTCGCTTATATGCTGGTAGATCCAATGTTT
TTTTCCCCTAGCTGTTGAGGACGACTGGGTGTATGCGCTCTTGATCAATTTTATTCCTGT
AGATTTCAGTCGACTGTTGTAGTTCATCGAGAGCTTTTTATTGGGTTAGAACTGATTAAT
GTTGGACCTGCTGACTGCTGTTGTAGGTTCTTGTTTATGTCTGCATCATCAGATTATTTG
TCGGTCCGACCGTCGCACGAATTCTTGATTTAGTTATGCCAAACTCTGTTCCTACCTTTT
TTGCGCAAAAGAAGAAGAAGAAAAAAAACTCTGTTTCTACCTTTCTGCTCATCTGGATCT
TCATATTAGTAGTACTGGTTCGCTGGTCGGCCGATCCTCCTCCTCACTCTCCCTGTAATA
GATCACCGTTTCACCATCCTTCCTTCCTTCCTTCCCCGCCCATGATCGCCCTTTCGTGAT
TGTTATGTTGTTTAACCCAGTTAGCCGAACTGCAGGTGGGTGGGGTCCATCGGAGGAAGT
GGGGAGAAGATGGACGCAGAGCAGGAGTCGCGGTGGGCGGCGGCGCAGGGGATTGGCATC
GGCGAGGACCTCGTTCCAGCTGCGCTGCGGCACCTGGAGTTCCTCGCCAAGGTCGACCGT
CGCCGGTGGCTCTACGAGGGACCGCTGCTCCACAGGGCCATACACAGGTATCACCATTAT
ATTGGCTTTTCAACAACACTACTTACACAAGAGACCTAGTTTATTTTCTGAGGTATTTCA
TTCTTTTTCTGTCGGGGTATTGTTGATGAACAGTCTCTACTCTAGGGTGTGTTGGGAATA
AAATTTCTCAGTACATTGCCATATTTCAATAGACTTTTGGTGAATTTCAGGATAACTCTT
GTGCAATCACTATTTGGAATATTGTACATGTCTCCTGGCAAACACCTGCTTGAGGAAAAT
TAGACAAAACCACTAGTTTAGTTTACCAAGTTGGTGGAAGAATTGAACTGAGAATGTTTG
GGTTTTCAGTCTTAAGGACTGGCATTGCCAGTTATTTTTTTCTTCTGAAACCATCATCTG
ATGTGTGCTTTCAGTTACAATTTGTTGCTACAGATCTGGCCTTATCTGGAAATTTTGGCA
TGAAAATCTGGCTTCTTATTTAAGTTCAATGTCCCTATCATGCTGAAATAAGTGATACTA
TGAAAACAAAACACTCATAGTAAATTAATTTATGTTCTGTGTCGAATAGACTTTGAATTA
TTGACTTTGTTATGGTGCTAGGTACAAAGCTTGCTGGCTTCCTCTTCTTGCCAAGCACAC
TGAGGCTTCTGTTGCAGATGAGCCTTTAGTTGTCCCGCTTGATTGTGAATGGATATGGCA
CTGCCATCGGCTTAATCCGGTATGTATACTTAAGTTATTGTTAACTCACTGATGCTTGTG
TGTCGTTCAAAATCTGTGAACACCACATTAGAGAACTAGTATTTGGCTATTTGCACCCCT
TGCATAAAAGAAAATACTAGTGAACATGGTTGGAAATGTCTAAATCAAAATTATCTTGTA
TTGTTTCTGATTTTGCTATGCTGACAACAATATCTTTCAGACTCAATACATAAAGGACTG
CAAGAGATTATATGGCAGAATACTGGGCACTAACAATGTCAAGTCCTCCATTCAAGCAAA
TTCCAAGGATCAGGCTGAGAAAGTTTGGACTGAGTTATATCCTGGAGAGCCTTTTGAGTT
GGAATACTCAAGTCCTTCTGACGATTTTGTTTACGTGGGTGATGGAACTGCCGGAGGCAT
TTCCTATGATCTGATCTCAGCTGTTAGGAGACAGTCTTCTTTCGTCTACCAGGTAGTTAC
ATTACTAACCTTTGCTCTGATATACTACGTATAAGACAAGTCAATGTGATAGATTACCCA
TGATTTAACGACTGATATCTGAAATCTAGCTATTCTGAATTTCACAAGCAGATTGATACC
TGATTTTATTAGCCTAACCAATGTTGGTGATAGTTGAAAAGTTGGGTCACTGTTGATCCA
TACATGTGGAAGAATGCAATAGAAAAGCAGTGCTACTGCCTTTTCGTAAAAGGAAAAATA
TACAAGAACAATAAATAAAAAAATATGTATAGAAAGTCAGTGAGCTCCTTTGTTTCTGGC
AGGTTGGAACACCAAACATGCATGACCATCGTTTTCTTGAAGAAGCTCTAGCTCGATACA
AAGGTTTTTTGTATTTGATCAAGGTGAATCAGGAGAAAGGAATGAACCTCTTTCGTGTGC
CAACGTACGATGTGGATCTAATGTGGCACACCCACCAACTGAATTCTGTTATCTACTACA
GTGACATGCTGAATCTCCTTGGAAGAGTTCTGGAGCATGATGACACAGATGATGACCGAG
CTGAAGGAAAGAAGCTCGACACCGGTTTTTCAGGGACCACCGAGCAGTTCGAGAATACCT
TTGGTCTGAGATACTGGAAGGTTGGTGCTATGTACCGTGGAAGCTTGCCATGTCCTGTGA
CATCCATTCCTCAGATATTTAGTAGTGAGGACGATGGTGTTTTTGGTGTCGATAAAGCAG
AGAAGCATCTTACTATTCTTGAAACAACAGTTGTGGAGGTATGATGCTCTTTTTACATCT
TATTGTTGTCTCTGAAGCAATAGTCACACAAGTACAGTAATTTTGGTTCAAAGATTTTTC
TGATCTAATAAAATAACTCAAAATGCGGTATTTTGTACTATTAATAATATTATTAATTTG
GAAGCATGCCTGATATTTGTTATCTAAAAACACGATTGAGCCCTTCTTTTGCCACGAGAC
ATTTACTGAAATTATGAACTCAAAATATTTTCATCCTTTGCAGTTATATTTACAGATTGT
GGACATCAAGAATTTACCATCTGCAATTCCAGAGAAAAGTGTGTACGTGTGGTTCACCAA
GACTCAACCAGATGTATTTATCAGTGATGGTGGCAGGTTAGATATTTCAACGAAAACAGG
GAAGAGTATTGGAGCTGGTTTCCAATGTGAACCGACTGGCGAACTCATTCTTACAGCAAT
GGTTGATCAGGCCTATTTTGGTGCATCTTCATCGAAGAAATCAGAACCACTGGGGAAGGT
TTTGATCTCTCTTCAAGAGTTTACACAGCCTGATTCCAAGCTTTCCTTTGAGAGGTGGTT
TGAACTGAAAAGTCATGGTGCATATGCTGGTTCCCCTCCTGTCAGTCTTCGTGTTGCTGC
ATCTTGTACTGTCCCAAGGCAGGCTCCACAGGTTCTTAGCATGGTCAATGTGAAGCCTTT
CTCTCTGAAGGCCTTTCTATTGCCACATTCCATCAAGGATCAAAATATGATCTTCTGGAC
TCGCTTCGTGTATGACTGTGGTACTGAACTCGTTCGTCTCCAGATAAGGTATTTTTTTTA
CTGTGGTATCAATCATACATATCGGTGAAGAACTGATTGAATCTAGAAACACATTTGTAT
CCTGATTAGTAAGTCCTGCATGATACTTACTGGTAGTTTTTTGCAGGAACAAACAAAATG
TTACTATATGATACATTGATTGCTAATTACATATGGTGTTATTACATCTTCATTTCAAAC
TGCAAATTGATATTTTCTGCAGGAATTAAAATTCAACTTATATAGAAGTATTTGTACATT
ATCTTCAAAAGAGATCCAAATTTATTCCACTGGACACCGGAAAGTTTTACTTGACTATGT
TTAAGAAAGAAATATCAGTTTATTCTGGTCTAATGAGAAATTCCTCCCCTTTACTTCAGG
GAGCACAAGGCTAAGAGTGGCATGGCTCTCATTCGAGAATTAGTTGGAGTAACAAAGTCA
TCAAAGCAACCATTTCAGCTTGCAGAATTCATGAAAAACAATTGGTCTTTTAATAACTCC
AACTTATCCATCACTCATGACCTGAAACCAAGCAAGGATGGCTGCATACAGGAGCTCAAA
TACGGCAACAAACTGGTAAGGACAGCTGCAGTCTGCAGCTCAATTCGTACATGCAGTCTG
TTCGCTCAAAAGATAGTGATTGCATCAAGTTATATGTAAATAAGAAACGTTTATGCATTT
AACATACTCACAGTTCTGGTACTTCTTTGAACAAAGCAGATCAAACTATACAGGGGAAGG
AGACTAGCATATGAACTCAAATGCTGCAGTCAGCATGCTGATGATACTACAGCAGTTACT
GCTGTTAAGTTCTCAGCTGAACACCCCTATGGCAAAGCAGTCGCACTACTTGACACTGAA
TCAGAATTTATCACAGTACAGTCTTCAGCTCTGATGTCATATCCTTCTAAGTACTCCCTC
CGTTCCATAATATAAGTTGTTATTACAACCAATGCACTTATATGTTGATTGTAATATCAT
CTTTATTATGGGACAGAGGGAGCAGTAAAGATTAATATCCTTGCATCTCAGATATACTCA
TGGTGTCCTTACTTAAATTTAGGTGGACGAAGATTGGTTTCTGCTTCCCTGGGTCGCAAT
ATCATTCTTATTCCTGAATTCCATTGGCAAAGATGGCGTGAAGCTCATCGAAGGTGCCAT
GGTACATAAGCGTGAAACCGTTGAGCCTGATACTACAGTGGCTTCTGAAATGGTGAAAGG
TGGAGCAGCAGGTGCCACTGCTGGTCTGGCGCAATGTGGCCCTTGTGGCACGGCTGGTGG
CGGTGACATGGTCCTGGCAAGTGACAAGGCTGGTCATGCTGGCTGTGGCGGCTCAGTCAC
TTCAAGCGGCAAGGTGGCTGATTCTAAGTGCGGTGGTTGTGGATCAGATTGTGGTGGGGG
AAGCGATGTCTCTGTGGTCACCATGAGCTACAAGAAAGGTCATGCGAGCTGTGGCGTCGT
TGCAGGCGGCGAGAATGGCCATATTTCCTGCGGTGGAAGCATGGTTATTGAAAGCTCCCA
GGAGGGGAACACCAAGTCAGGTGGATGCGGTTCAGGTTGTGGTGGTGGAGGCTGTGGCTG
CATGGTCATGGAAAGCTCCAAGACTGGCTTCGCCAAGTCAGGCGGTTGCGATTCAGGCTG
TGGTGGTGGTTGTGGTTCGGGCTGTGGCGGTGGTTGTGGCAACATGGTAATGGAAAGCTC
CAAGACTGGCTTCGCCAAGTCATGCGGATGCGGTTCGGGCTGCGGCGGTGGCTGCGGTTC
GGGCTGCGGGGGTGGCTGCGGCAGCATGGTCACTTCATAGTAGTTATTGCCTTCCAGTTC
CATGCCCTTCGATTCCACTCATTGCTTGTAAATAATGTTGAGGTCGGTTGTTGGTTGGTT
CAGTTGTGGTGTGGGAAGGTCTGGGTTGTCCCAGTCCGGTAACCGGGCATTGCCTAATTC
TATAAAAAATAGAATGACATGTATGTAAATATACTCCTTCCGTTTCTAAATACTAGTAAA
CATGCCCGTGCGTTGCAATGGAAGGAAAAAATACTGAAAATTTGCAGGGACACGATTCGG
GATCCGGATCCGGTGCGAGAGCACAATAAATTTGAAGTTTCAACGATGAAACTTACAGTT
TCTCATCTAAAACTGCCAAGTTTCAACATGTTTTAGAGATGGACGCAACTGACGTCCGAA
CGATCCTCCCACGATCCAGTTCTTCCATACCGACGTGATCTTCGATTTATCGGGCATGCA
CCCTTCTATCCCACCACTTCTCAGGCCTCCTTTTTATTTTGTATTCCGACATATGTGACC
AGAATAACGAGCTGTTCTTTCTTTTCTTACCATTTTTCTCTTCTTCTTTTACATCGTAAT
TTGTGCATCACAGACCTGATAACTCATGCATCGTGGATGCAGTAACTTTTTGACGCTAGG
TAAAAAAATGTTGTGAAACACCTAGATAAGTTATACACCACGAACCTTATAACTCACTCA
CAAACACTGTGGTAACTTACGAATCAAAAAATTGTTGTTGTACAACATCCCAATAACATA
TCTGTAAAAAGAGCACGGTGATTTATGCGCCATGAATCTGATAGCTCACGCACAAACATT
GCGGTAACATTTTTTGGCCACATGAAAAGAAGTTGTAACATACCCCAATAACTTCTCTAT
AAAGAGCATGGGAATATATACGCCATGACCTGGTAACTCAGCCACAAACAATGCGGTGAC
ATTTGACCCGGAGAAAAAAGTTGTTGTAATACACCCCGATAACTTCTTTGTAAAGAGCAT
GATAATTTATATGCCACGAACCTAACAACTCACGCACAACAACATTCCCCCCCCCCCCCC
CCCCCCCCCCCACCACCTCATCTCCCGCACATCAC