morexGenes - Barley RNA-seq Database

Contig contig_240625
Source Contig contig_240625
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_240625 (5916 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_240625

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_33833	2	1336 bp	MLOC_33833.1	Available	Available	LOC_Os05g41060.1, FRAME:+2, EVALUE:3e-125, 13105.m04350 protein ADP-ribosylation factor, putative, expressed
CDS Structure of MLOC_33833

Contig Sequence (5916 bp)

>contig_240625 5916 assembly3_WGSMorex_rbca.fasta
AAGAAGATGTTGCATTAAACTTGCTACCACTTTTTCTCATGAGGGCTCATCTGATGTTGA
GTTAGATGACTTCTTTTCTGAACTAAGAATGCTACAATTGACCCTACCAGATAATGAAAT
GTGTGCTATTGAAATATTTGAATTTGCTACAGATATAGATTGTTTCCCAAACATTTCAAT
TGCTTATCGAATTTTATTTACAATACCTGTGACGGTTGCTTCAGTTGAAAGGAGCTTTTC
AAAATTGAAGTTGCTCAAAAATTATTTGAGATTGACTATGTCACAGGAAAGGTTGAATGG
ACTTGCTACAATCTGCATTGAGAAGGATTTTTTGGACAAGATTGATACGGAGGAAATTAT
CAATGACTTTGCTTCTCAAAATGCTAGAAGAAGTTTCCTTATGTAATTTGCATTTCATCT
TTTGCAGTGTTGGGATCATATAGTGAGAGTGTGTGTCATAATCTGTAATCAACAAAGTAT
TATCTATATTGACTTTACAATAAAAATAATGCATGATTGACTATTTCAGTACATATTTTA
TGTGCATGGCCCCCCTCTCTTTTGTTTTGCATAGGGTCCCTGATATGACATGGCCGGCCC
TGGCAATATACATCGACAACGTCAGATGTGGGATGTTGTTCCCAACACACAAAGAAGTTC
CTAGAAAACATAGTAAGACCAATCGCATCCTTAGGACCGAAAACTATAGACAACAATCCA
CTGCCCCTCGCATTGTCTTCATTAACATTCCCAATGAGAAGATGAAGGAGATCGGAGCAG
GGGCTAAGTCTCTTGAGTAGACATGTAGAATCTCGTTGAAATCACTACAATATCCACTCT
CTATGTATGAAGAGATCTGATGGGATGAAGCACATTGAAAGTGGTAGTGCCTAAATCCAC
GTAACGACCAGACACATATTGTTCGCCGGAACCTCCTCCCCCTTATTCCCCAAAGCTTGT
CTTGGAACACCCATCAATGATAAGGGAGGATGAACCACCACATCACAACATCGAATTAAC
ACTAAGGAAGGATTGGCCAGGGGTGAATTTTATGGGTTCTCATGCACCGACAAAAGGGTA
AAAATCGGTTCCTAATGTTTGATGCTACGATCAAGTTCTTTTCTTAAGAAACACAATACA
AATGGTGACACGTGCATACACACACATAGACCCCATATCTACGAGCATCTGTGAGAGGCT
GGACCTACAAAATTTCAGACCGGCCAAGGCATCAAAGAACCTAGAATATCTTAGCAAAAA
AAAAAGGAAAAAGAAAAAAGAACCTAGAATAAATCAAGAGAAGCGGTATCCTGAAGTGGG
TCGAGAAAGGCTAGATTACCATACACCTGCAAATCTGCTACGCCAAACGAAGCTAAGACC
TAATCGATCGATTCGACTTTCAGAAAATCTGCAATGCTTGAATTGAATCTTACTCATATA
CCAGAATATCGAATCGTATACGAGCAAAATAGTGGAGCCGACGAGGCCCGCACGCCAGTG
GAAGCACCGGAGGAAGGTGCCCATGCGGTGCGGGCTGCGTGCGACTGGGCGCGGTGTAAA
GGCCACGTGAGAATGGGCCTCGCGCCCTTCTATATAGCCCCGCCATCGGGCCGCCCGGTC
TCTCCACCGCACCGCACTGCACGACAGCCATCTTCATCTTCCGTGCGGTTCCCAGGCTCC
AACTCCCACGCCCGTCTCCCCCGAGATCAGGCGGAGCACGCCCGGGAGCGCCGAGACCCC
GAGAGCCTCCGTCTCCACCACCCCGGTGAGCGCCGCCGCCTTACACTTTACCCCCCTTGC
CCTAATTCCGCCTCGTAGCCCGCGGATCTGATCGGTCCTGCCGATTCCGTCGATGCGCGC
CGCGTTTTGTTTGGTGGATCACGCGGATCCGCTCGTCGTCCCCACGGAGTTCGAGGTGGA
ATGGTTCCCCTCCCGTGGCTTCCACGCTAGTTTTGGCGAATCTGTTCGTTTCCTTTGGCT
CTCCGTTTCACGAATCCGATCCGATCCTGCCCAGATCGGCGAGGCGAGGGGTTGAGAATT
TTGCGGATCTATTGGTTGGGAGGGACTGCATCCATTCCTGCTGAATTCTGTTGGCCGTGC
TTGAGTTCCTTGGCGTAGGCGTGTGTGTGTGGGGAGATCAAAGTGGATCTGTATAGATCT
CTGCGTCTTGGCGTAAGCTTCTCCCTTTGTTGTGTTGCAGGAGCAGAGATGGGGCTCACG
TTCACCAAGCTGTTCAGCCGCCTCTTCGCCAAGAAGGAGATGAGGATTCTCATGGTTGGT
CTCGATGCCGCTGGTAAGACCACCATCCTCTACAAGCTCAAGCTCGGAGAGATCGTCACC
ACCATCCCAACCATCGGTAAGCTGCTTTCTGCATTCTTTGCTTCCACTCTGGGTCATGTC
TCAAATGTAGGAAGATGCTGCTTAACATATTGTTGTTGACATAGAAGCGAACTTAAGTCA
TATCAGGAGAACACTGCTACTGTCATGTTTTTTTCTTCTGTAAACCTGCTGTAATGTGAA
TGTAAAAAACATTACGTAGCAAAATCTGCTGGTAGGATTTGATCTCACTCTGATTAGATC
TTAAACAAAATAGGGATCGCCAGTTACTACCTGGTAGATCGCACTTCAATTAGTAACATT
CGAGTATTTTGGAATTTTGCAGGTTTTAATGTCGAAACTGTTGAATACAAGAACATCAGC
TTCACTGTTTGGGATGTGGGGGGCCAAGACAAGGTAAGAACATCTACTCATGATTAGCTA
ATTGTGTAAGACTAGGAAATCATGTCGTCCCTTTGTGAAACCGTTCCTTCCCCTTGGGGC
GGAAGAAAATCGGATCCGGTTTTACATTGATGTTGTTAAGCTTATGTTGTCACAAGCTTT
AGTCTGGTGCTTTAGGCTTACTCTTTTATCGTTTTCTGTGTTAAAACAGATCAGGCCCCT
GTGGAGGCACTACTTCCAGAATACGCAGGGCCTCATTTTTGTCGTCGACAGCAATGATAG
GGAACGTGTTGTTGAGGCTAGAGACGAGCTCCACAGGATGCTGAATGAGGTAATGCACTA
GTGTTGTTGTAGGTGTTGTGAATTTACCTAATCTGCAAATACCTGTCTGGGTGTCCCTAT
ATGGTAATATGATGTTTTGGTTCAATAATCAATAAATACGTGATGATAGCTCAACTGTGA
AGCACTATCCATTTTCTTCTTTGTTCAGTCCTCTTTATTGAGAATTCACTTGTTGAAATT
TTAGAATTTGTTTCCCTTCTATATTCAACAAACCATAATTAACGAAGACATTTCCATGAT
ATAGGATGAGCTGCGTGACGCTGTGTTGCTTGTATTTGCGAACAAACAAGATCTTCCTAA
TGCGATGAATGCGGCTGAAATCACTGACAAGCTTGGCCTGCACTCTCTGCGCCAGCGGCA
CTGGTAAGGAACTTCATATATATACGTAGTTCAGAAGCTCCTGACCTTCTAATAGTTTGG
TCAAAATTTCCCTGGTGTTCTGCTGTTTCTCGATACTGAAGATAGTTGTAATTGAGAACT
TTAATTCATAATAAGGCTTATTTGAAGGTACATATAGTCAGTGCATATCTCCAAAACGAA
GTTGGTAGCAATACATATTTCTATTAATTACATAAGGTGTACCCCCATGGTCTTGAATAT
ATCTTTAACTAAATGTAAGTCCATCTGTCTGCTACGCAATTTATCATGTCTAAAATGGTT
ATTGCTGTCTCTGTTTGCCTTTTTGGATTCGTAAGGAGCACATGCTAGTGCTAAAATAAA
TTATTTCCTGTGGTGCAGGTACATTCAGAGCACTTGCGCGACATCTGGTGAAGGGTTGTA
CGAGGGACTTGACTGGCTCTCCAACAACATTGCCAACAAGGTATATATATGAGCCTCCAG
TGGTCATTTCTTGATTGCATATCTTGTTTGTACTATGCTGAATGCTTCTGTAGACAGCTG
CACTTGCTTAAATGTTATGGCCCTTAGCAGCTGTGATGAAATGAACAAACTACAACACAT
TTCTCCTGCTATTTATGATAGCTACTAAATGGAGTTTGTTGCATCGGTGCTTAAATTAGG
CACATAATGAAGTTAAACAAGCCTCCTATGTTCTATGCTGTACCTTAACAAGTAGCATAG
CATGGTGCACCAATACTTTGTGCCTTTTGCTATGATCTCCTTCGACTGACTCCATATCTT
CTTCGTTTGTTTGCACAGGCTTGAAGCGTATCGAGGACTGCTTCGAGGAATGAATGATGC
TGGATGTCTCGACAACTCACTACTACCATTTTACATATTGTGATATATATACACTGTACA
ACAGATAGTATGTGTGCGTATGTGACAGGCAGAAGCTCCCTTCTTTAAGTGAGCTAGTAT
CAGGTCAGGTTTTTTTTTTGTATGGATATTATCAGTATTTCTGTGCCGTGGTTTTACAAG
GTTTACTTTGTCAACATTGTGTGTATGAACCCCTGTCTTTTTGAATTTTAGTAAGATTGA
GGTGCGGTTGCCAATGTTGGTTGGTTCAATTGAGTGATGTGGATGGTAACATTATTTTTA
CTAGTTCTGTATACGATCTAGTACTGGTTCGGATTTGTTCTGCCCTTTTGGTCTGGCTGT
CGGTATCGTTGCACGCCATCCATACTTATGGAGATCAACTCAGGCACTCGGTGATGGGTG
CATACGCCATAATGGGATGTTCATTGTTGCATACGGTGAATATACATGCGGGTATGTAGT
TATATACTTATATTTCTTTTTGCGGGAAGTATACTTATTTGTTGGACCATCATATCTAAC
GAACATTTGCGAGGAACGGTTGGCGTTTTGAACGATTTTCATCTTTGCTCTATGTAATTA
AAAAAGACATCAAAGTCTCATTTGAAATGCCATGTGTATGTTCTTGACAAACGTTCTCCA
GGTAGCAATACCGTGTTTGTTGGTGTCACTTCCATAACATTGGAGAATCTTCGTGTTACA
ACGGCACTAAATATTCTACCCCATTTGTTTCTAAATATAAGTTTTTTCAGAAAGTTTAGT
ATAAATTACATACAAATGTATAGTGGCATTTGTTTTTTGCAACGAATTTAAAACTTTATT
TAACGAAACAATAGCCGGTTACGGTCAGCCGCAGGCAACTCGTAAGGAATTCGGGGCTTT
GATCAAGCCAGCTTTCTGTCACATCTAGTGAGCAAGCACGCTGTGCACACGTATGAACCG
AAACGTTAAGTTCCCTACTAACATGTCCAACTGAGAAAGAAACAAAACTAGGTATAATAG
CTTTCAATTCTCTTAAGATAGGAGTCGCAATTGATCTTGTGGTGGTGCGCGAATTCGAGA
GGTCCATCAACTCCAAACAATCAACCTGAATTATCACATGTGAGTATCCCGGGAGCTGAG
CGAAAAAATCAACCTGAATTATCACATGTGAGTATCCTGGGAGCTGAGCGAAAACCACTC
CCTCCCGTAAAGCCAGCAGCTCGGAGACATAAGGATCCGAGACTCCATGTGTGGTTTGCA
CCAGGCTCCCAAGAACGTGAGGTGCGAGGCACCTCGCTACCCCTCCTGATCCTGCTGAAA
GAGCATATGGAAAAACTGATCCATCGGTGTTGATAGTAATCCATCCCGGCTCTGGTGGCC
GCCAATGTTGTTCTGAAGTTGTAGGATCGGATGTACGTCTAGGGGGGTGGGGGTGATTAG
ACTACTTGACCAAATAAAAACTTAACATTTTTTTTAATTTTAGGTGTGAGCCAATTTTAG
CATTTGTAATTAGTCAAGCACACCGTACACATACATATATAAAAGTATTGCAGCGAAAAG
TAATGGCATGCAAATGTAAATAGAAGGAAGGGATAGGAAGATCAAACGCAAAGGTTGAAA
CAACGATTTTGGCGTGGTTCCGACAGGTGGTGCTAT