morexGenes - Barley RNA-seq Database

Contig contig_240242

Source Contig contig_240242

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_240242 (3937 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_240242

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_33784	1	389 bp	MLOC_33784.1	Available	Available	None
MLOC_33783	4	1380 bp	AK372341	Available	Available	None

CDS Structure of MLOC_33784

CDS Structure of MLOC_33783

Contig Sequence (3937 bp)

>contig_240242 3937 assembly3_WGSMorex_rbca.fasta
GGGGGCGGGGGGCGGCGGGGGGGCGGCGGGGGCGGCGGCGGCGGAGCGCGGGGATGCGGG
TGCGAGGAGGCGAGGCGCTGACAGGAGTTGGCGGCGGGGCGGAAACCCTAAGGGTGCATT
CTTATAGAACCGAGCGCCGCTGCGGAATGCGCAGCCCTTTCCGGGCCTTGCCACCCGTCT
CCTCGGCCCGGTCCGTCACGGAGGCCCATGGGAGGCCCGCCTGTCGTGGATAATCACTCG
CGGCGGGGTTCCGTCAGATCAGGCCGTTGATGGTGTGTTAGCCGTCGGATCTTAATGCTC
GCTCCGACCATCCTCCGTGCTGAAAACATAAACCAGAAAGAGAGAGAGAGAGAGGGATCT
CCTCGCCGTGGTCTCTCTTCCTCCCCCACTCCTCCCTCTCCCCTCCGGCCACCGGCGCGG
CTGCTTCCCCCCTCTCCGTCCCTCTCCGCGCGACAGGGTCTGGTGGCGCGGATTCGTCCC
GAAGCCGATCGAACCGGTTCGTTCGGTAATCTGCCAAACCCGCGCTGGTTTTTTGCAAAT
TCCTCGATCCGTCCCGTGCTTGCGGCGGCCGGCGGCGTGGGCGAGCGGCCCGGCTGCGTG
CGATCCGCGCGTAATGGCGACTCGATTGTTCGCGGCTGTTGTTGTCTTTTCCGCCTGGAG
AAATTCGTAATGGAGTCTCCGCCGGTTTTGTGCAGTTGGAGCGTAATGGCGAGCCTGCAG
CCTTCCCTCCCCGAGCCCTCCTCCTTCGCCGGGGCCTCGCCGCCGTCTCCCTCCCCGATC
GGTGGAGGCGCCGGTGGCGGCTCTGCCTCGGCGGCGCAGGAGCCCAGGAAGATGGCGTCG
GCGGAGCAGCTGGTGCTCGACCTGTGCGACCGCGAGCTGCGCGAGAACGCCCTCCTCGAG
CTGTCCAAGGTCCGTCGCGTCCTCTTCTATTTCTACTAGGGTTCTAGCGCCTCCTTGCAC
AGAGCAATTGCAGACTGCGTGTTCGTTCAGCCATTTATATAAGGTGTTTTGTAAGGCTGA
AGTAAATCGGTAACCAAATTACTGATTTCAGAAACGAGAGATATTCCAAGACCTGGCCCC
GCTTCTCTGGCACTCTTTTGGCACAATTGCTGCACTGCTTCAGGTATGCGTAATTCATCT
GTCTTCGATGTTTATGTTTTGCATTTCTTTACCTCATGCTGTTTTTATGTTGTCTGACTG
TGAAAGCAGTCACTATTCTATTTGTGTTTTCAAGTCGCCACTTGCTGTTTTGGATGCAGG
TTATCAAAATTTGGATCTACTTTCTCACTTTGTGTGTTTGACAACCTGAAAATACTCGCA
GGAAATTGTGTCGATCTACCCTGCACTTTCACCCCCAACTTTGTCACCAGGTGCATCAAA
CCGAGTCTGCAACGCACTTGCACTTCTTCAGGTACAGCTCGAAATAACAAGTGGGGAGAT
CACATTTACAAAATTGCTTCAAGTCTCCCATGTTATTAGATTTGTTATTGCGTATATTTA
TTGTCTAATTTTGTGTGTTTGTATTACAATAATTGCAGTGTGTTGCATCGCACCCTGATA
CCAGAATCCCTTTCTTAAATGGTAACGAGTTCAGCCATTTGCATTGTGTCTCACATATTC
TAATTACTAGTAGCTTGATATGAAAGAAGAGCCATTCGGCTTTTGATATTGTTGTTGTTA
GCGATTCACTTTCTTCTCTCTGTCCTCCATTTGTTCCTTTCAGCTCATGTGCCGCTGTTC
TTGTATCCGTTCCTGAATACATTCAGCAAGACAAGGCCTTTTGAGTACTTGCGGCTTACC
AGCCTGGGTGTCATCGGTGCTCTTGTTAAGGTATTTTTGGTACAATTTTACATGAACTAA
CAATTTTTGTATCATGAATCCAACCCTGCAATGTTATATATTAAACATGATCCTTTCACT
AATTCTTCAAACAATGCAGCATCATGTTGTTTTTATTCCAATAACCTGGCATGAACAATG
AATCTAATAAGGCCACAAGGGATACATCCATATTACTTCGTTGTGCAACGAAGAGATAAA
CAACTGAGTAACTTATAAACAAGCAATGTTCTATCTAATGTTTTCTTCTTTCTTTTGGAA
TAAGCTGCATGTGTTTCCAAATACCAAACGTTCTCTTCTTGCCTTTGGAAGAAGCTTCTT
TACCTTATTATTATGCATGCAGGTTGATGACACTGACGTTATCAGCTTTTTGCTGCAAAC
TGAAATAATTCCTCTGTGCTTGCGTACCATGGAAATGGGCAGTGAACTATCAAAAACCGT
GCGTATCTAACCATCTCAATCCTCATCTAAAGTGTTACAGTCTTTCTTTTCTGTTTAGCC
CTAGAAAAGATCAAATTACTTCTTCTTTTCAAAAATTATATTTGGCTGTCTGAAGTTCCT
GTGGAACGCTATATCACTAATTTACTACTCCCTCCGTTCCTANNNNNNAGTCTTTAAAGA
GATTTCATTAGAGGACTACATACGAAGCAACATGAATGAATCTACACTCTAAAATATGTC
TATATACACCCGTATGTAATCTCCTAATGGAACCTCTAAAAAGACTTATATTTAGGAACG
GAGGGAATATCAGTTAACATTAATATGCTTGTGATTATCTATAGCCTTATATGCCATGCC
AGGCTTCTCTCTGATAATAACTTGAAACCACTTCACAGTTTATAGACTTATAAAAGGTGT
ATTATGCGAAAAACCTCAAATGCTGTTTGGCTTTGGCAATCAGTAATTGACCTATGCTGC
TAAGGGCGTTGCGTTACTATTATCAGTTATCAATTGGACTGGAAGATCAATAACTTTGTG
GATACATAAATATGCCAACGTTTTTGCAACATCTTTCCTGTATAACCCACAGCCACAGGA
GTTGAATATTTTGAGGTGCTTAAGGCCCTGTTTGGATTGTCGTTTTACTTTGAAATACAC
CTGTAAAAAATACATGCCTTGCTCTGTCGTTTTGTTTCCAGCCCAAAATTACTCAGTTGC
CAGTATGGCGTAAGTTAAAACACCTCCGCATTCGATTACACCGTTCCCAAGCGCGCCCTA
AGATTAATTTGGGTGGAATACAAGTTGAGGCTTGGCCACACGGGGTCTTATACAGATAAT
GATATAAATGCATCCAGTTTCATTAATTTAGTTAAATATGCATAAGCAGGTCGCTACCTT
CATCGTCCAAAAGATTCTGCTGGATGATATTGGACTGCACTACGTATGTGCCACCGCTGA
GCGTTTCTATGCTGTAGGCAGCGTTTTAGGAAATATGGTAATATCACTTGCTGATCAGCC
TTCCACAAGGTTGCTCAAGCACATTATTCGATGTTACCTCAGGCTGTCAGATAACCCCAG
GTTTGTGCTGTCATTCATATGTCACTAAATGATTTTACATCTATCTTCCCATGTGCTGAT
TTTTTGTCTTCCCTCACAGGGCCTGTGTTGCACTACATAATTGCCTCCCTGACATGCTGA
AAGATGGGACGTTCAACATTTCTCTTAGGGTGAGTCATATGCTGTTAACATATCTGTCAT
TACCAGTTCACTCATGTATTCAAATAAAATGAAACGAACTTACCGATCAGATACTAATCG
TATTTATATATCTGATGAAACGAAGGATGACCCCGCGACAAGGCGCTGGCTCCAACAACT
GTTGCATAACGTGACAGTGGGTGGTATGGGAGGACCTGGCATGGGGGTGCCTCCCCAGCC
GGGCCTGGATCACATGATGGGGATATGATCCAGTTTACTTGCTGCGATTCACAACAATAA
TGGAGTCCCTTGTGAATCGTGATGGGGGGAAGGGGAGGGGATCTGAGCTGCTAACCTTTT
TGGCCGGCGGGGGAGAGTCCTGGGCGGAGCAACGCCGGAGTAGCGGGAGGTGTCGTCGCA
GGCGACCTCGGCGGCGATGGGATTAGCTGCGGGCGGG