morexGenes - Barley RNA-seq Database

Contig contig_239796

Source Contig contig_239796

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_239796 (1637 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location

Predicted Genes from contig_239796

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_33725	1	1615 bp	MLOC_33725.1	Available	Available	LOC_Os03g47410.1, FRAME:+1, EVALUE:4e-15, 13103.m05100 protein retrotransposon protein, putative, unclassified

CDS Structure of MLOC_33725

Contig Sequence (1637 bp)

>contig_239796 1637 assembly3_WGSMorex_rbca.fasta
TCACAAGGACAGTGCTGGTAATTATTTAATTCACGCCATATTTAGATTTTCATCCCTAAC
TACAATTTGAGTTACATGCATTATCTGCAATTTATGAAGTGAAGTCCTATGAGCCTAACA
TAATTAATGGTTGAAAGCTTGGTTTGAATTGAATTATTAGCAAATAAGGAGTAAGGAATA
ATTGCAAATTATCCCTTCGATGTCTAGCCATATGAATTGTGTGACCTTATCGTTCGCAAT
GATTCTAGATTGTACATATACATTTTTCTAATTGTTGACCGACATATGAAGCAACATATG
CTTAAACATATGGTGACCGACCACTGGTCTCGGTGTAAATCTCAGTAGCAGCTTTATATC
GAAGGGAGTGAGATGATGATGACTTCGTGTTGAATTTTGTAGTTATTTAAATAGTTTCTT
TAATGGACCGGTTGCTCATATTAGGAAATGGGCTTGCGCCATATCGAGTTCTTGGAAATA
GACAAGATGAAGGGATGATTGAATTTATTCCTTCTATTTCTCCTGCACATGTAACTTGAG
ATTGAATATGGTAGCATTACAAGTTACTAATAGAAGTTCCATTAGACTAATTATGTCCAC
CTAGTATAGCTACCCAATGGTCAGAAGCTTTTATTAAAATTAGTGTTGGTCACACTAAAA
TGAATATATTATGGGTGAAATATCAGTCATCAAAAATAGCACTTGCAATGAACGACAAGC
TCCCCTCTTTGATGGTAGTGATCACTTTTATATTATCCTCATGGATCTCAAGTTTATTGC
ATCCGCTCATATATGCAAGATTTATACCAAACCTCCAGGATAAGGCCTCTACTATAGAAG
CATTATAACTAGAATCAACCTTATCATTTGTATCTGCATTGAATTTCACATTGTTACCCT
TTATCACCGCTCCAACAACACCCTGATATGAGTCAAGGATCAAACGATGCATCTATGTTG
AGTTTCGCATGGTCTCTTTGGGATAGTATCTGCTTCGCATTTTATGCAACTCTAGAAATT
ATGATAGCTATATAATCTTTAAAATGTACGCCGAATTTGTGAATGCTTTTTTTTGGGTTG
TTGTATATTTAGCAATATTCAACCATCAATCATGTACTGCTGCAGGTATGAGTCTATTTA
TGTTTTCTTTGAGGAAATGAGACTAATCATGTTGCTTTAGAGAAAAACTTATGAATACAA
ATGAATAAACCAAGCAGCTTCTTGGTTGTCAAAGCATATTCTGAGAAGGGCTATGTGCAT
TATTGGGAATAATCTTGTAAGCCACAGCTTGGCAGCAAGGTACACGGGACTCGGGGCGAC
CCTTGACGATGCAGCCATGGTGAAGAAACTGCTCGACACCGTGTCGGACCGGCTATACAC
CACGGTGGACGTCATAGAGAAGTTCTGCGACGCTCATGCGTTCGTTTAGGTGCTCGGGCG
GTTGAAAGCGTTCGAGGAGCGGAGGTAGCAATGCACACACGTCGGCGGCGAGCGGGCAGA
TGGGCAGCTGATGCTCACGACAGCCCAATGGGAGGCGCGGCGGCGACAGAAGGACGACGG
CTCCGACGACTACGGGGGATCGAGCAAATCTTCGGGCAGCTGGAAGAAGAGGCGCAGGGA
CAACCACAACAAGGGGC