morexGenes - Barley RNA-seq Database

Contig contig_239418
Source Contig contig_239418
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_239418 (9171 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_239418

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_33673	1	435 bp	MLOC_33673.1	Available	Available	None
MLOC_33676	3	6521 bp	None	Available	Available	LOC_Os12g09089.2, FRAME:-3, EVALUE:7e-18, 13112.m00965 protein protein kinase PKN/PRK1, effector, putative, expressed
MLOC_33674	1	2861 bp	None	Available	Available	None
MLOC_33675	3	1728 bp	MLOC_33675.2	Available	Available	None
CDS Structure of MLOC_33673

CDS Structure of MLOC_33676

CDS Structure of MLOC_33674

CDS Structure of MLOC_33675

Contig Sequence (9171 bp)

>contig_239418 9171 assembly3_WGSMorex_rbca.fasta
CAGTGGCTTGGCGGCGCAAGATGCGGGCGCGTGCGATGGCGTGCATGGCGGATCTGGCGC
CCTCGGCGGCGCGGACGCGCCCCCGGCGTAGGGGGGTGCTGCAGGAGAGGGAATCCCCAT
GGCAGCGAAGGGGACGAGCGGGCGGGGCCCCGATCTGGATCTGGTGGTGCCCGAGTCTAG
GTCACGGCGGCTTCGGAGATGTGGTGTTCGTCGAGGTCTGGCGGCCGCTAGGTACCATGG
GGGTACCGACGGCTGCAGTTGTCTCGAGTGGTGTTGCAGTCGACGTTGGTGCAAGGCGGA
GAGCGCGGGAAGAGGCTTGGAGGGCTAGCTGATGTCAATGCAGGATGATGTGCGGCTTAG
GTGGTGTGGAACTTGGTGAAAACCATGTCTTGGCCTTGTTCCGTGACCAGCGATGGCGGC
GGCTGTGGCCGTCGTTGACCTTCTTGGAGGCATCGTTGCTTGTTCTCCCACCCCTTCTGT
GCGGATCTGGTCATTTTGGTCTCTCTGGAGGAAACAGATCTGATCGGACGATGACGGCGC
CTTGGTGTCGTATTCCCTCTTGAGGGCTTCGTTTTGGGAGCTTGGCATCGGTGACCGGGA
CCGGTGGACGGTGGTTGGTGTGGCGTCCAGACTTCTGTGGCAACGATGATGGTGGGAGCG
ATGTCGGCGACGCGGCAATGGTTGCGATAGTCGGCTCTTCTTCGGCGTGTTCACGGCTTT
GCCTCGGTTTGTTTGTTGCAATGGAGTCGAAGCTGCGGCGGTGGGTGGATAATACTGGCT
GCAGATAGCCCGTTCGGCAATCTTCCGTGGCGTCAGCCGTGCCTGGTTTTGTCCTTCAGA
GTTCTTCGTCAGAGTCGGAGCTGCGTTGTTTGGCCGTAGGTCGACGAGTCGTCGATTAGG
GTGGGCTTTGCCCTGAGTGTGTCAGTATATGGGAGTGGGCTAGGCCCTTGTTGTACCAGT
TTTAGCCCAGTTTTCCGTGATTAACTGGGCAATTCTCTTCTGCTTATTTAATAGATGAGG
CAATCTTTGCCTCCGTTTCAAAAAAAAACTAATGTCCTTGCAGTAGTAATCTTTGTTTAT
CTCTCTCAACATCTGACATGGAAATAGACGATAACAGTGCTTCTCTAAAACTAATGGGGT
GACATTGAACAGAAATTAACCATGAACCTTTTATTGTTTCCTACTACACTCTTGAAGCAG
TAAGCCAGTAACACTTGTTGCCCAATAGAACCTTTGCAACATATGATCTGTACAGTTAAA
TTGTCCTCGATTTCTCTCAGAGAACTCAAGTCACATCCCATCCACCAAAGAAGTGCCAAC
TTTTAATAAGACCAAGAACCTCAAGATAAAGATGCATGTGTGTGTATAGTCCAGGAGGGG
GATTTAGAATCTAGAATCCTCGGATCATGTATAGTCTTATCAGATCCTGCTGGACTGTAG
AATGGCAGAAGACATCTTGAATACAATTCAGATGAGATTGTGACTTCAATTATCCAAGTA
GACATGCCTTGTAACAATACTTAGGAAACTACTATTGGTTCGCACCTGCCAAAATGCTAA
TAATATGTCCTAATTTCAGAAGATATTAAAGCCACATTCAGATAAGGTTATTGTGGCAAT
TAATCACCATATCCAGGACTGTCCACCAGAAATTAAACAATGCTCAAGCAGTGTTCATGA
AAATGCTAGGCGCCAGATGAAAGTCAGACTGTCAGGCAATGGTCCAGGCGATTTCGTCCG
AGGTTGAGCCGTGGAAGATGACAGTGCAAAGGCGCTTCGCAGTCTCCTGCTTCATATTAG
GCCTCCTGATGTAGGGGGTGCGTAAGAGGGAGGGGGCCTGTCTTCTCCCTCTCCCTTTCT
GTAGATTAGAGTAGCCTCATCTTTCCAGCTTCAGTGATCAAGCCTTTGTTTTTGGTTTGG
TTTGGTTGTTGTACTTGGCGCCTTACCAGCATTCTTCTTAATACACAATGATGACACACA
TTTAGTTGTGTGATTCACAGAAAAAGATATTGCTTTGAGTGATCAGGAGAGGGGGGGTGG
GTTAGCATCTACTCCGCCCTATGCACCACTAGGCAGCTGACTGTCTACAAAGGGGGATGG
AGAGGACACCAAGAGCAAGGAAAGGGGAGGGAAAGTTGAGGGCATCAAACTCAACAGCGA
CAAGGAGCCTCACCCTCAAGGTCTTGCTTTCCTAGGATTTTACTTCCTCTTTAAATGGTT
CAACTCAACCAGGACACTCAGATGAGTCAAAACTTCCCAATGAGCCTATACCGCCAGTCA
GACCATCTTCCGCACCACCACTTAAATCAAACTCTTCTTGTGACCTTGTCTTCCTCCGGC
CACAGATGTGGTGTGGCCTTACCTCTGAGCTGCAATGAGGCCACTACTGCACCTCAACAC
ATGTCATACACAACTGTGCCTAGCTCGCACAGAACTTGGCTGACTTTAAGAACACTGGAC
TCATTATATTACTAACCAGGCTTCTCCAACACATGGCAATACTGATCCTATAGTAAAACT
AATTGGGTTCCCCAGGGCTTACGGAATATCCAAATATAAAGATAGAAAATAAACATACTA
CTAGATTAATGAAGGTGCACTGTCAAGAATGAATGTTTAATTCAAAATAATATATACAGA
GACTCAGCATAACTTCTGCCGCGGATGAAGAAACTACTTGCCTCATGTTTGGTAAGCCAT
CACCAGATTGCTTCGGTCATTTGGAAAGCTTCGGAATGATCTCCGCTATTTGACCCATCC
CAGAATGATCTCCACAAGCTAGCAAAGCAAACATCTCCCACAGAACACAAGAGCCCAGCC
TGTTAAGACTCAATATGGGCTGATGGACTTAACACAGGTAAGGGTAAATCCTTGTAAATC
CATATAGTCCAAATGTTAACAAACTTCCCAAGGAACTTCTGCTCAATCGTCAAGTCTGCA
ATCTGCTTCAAGCGTTCTATGGCATCAAAGATCAAACTACCATCCACCTGATGTCACGAA
GAAACACAGGAATGCTTTCCCCTTCTCACAAACTGAGAAATGTTTCCAGCACTAAGAACT
CATTCAGTTCACGCACCATGCTCTCCAGCCAACTTCAGTCAACAAGATGACCCACCCCAG
ATTGATCTCCATAGGCAACACGCTAAAAAGTGCTCTTGTGAGCATGAGCTCACCTGCATC
CTTTGATACAGTAAAATCCAAAAACAATATTTCAAAGACAAAAAAACAACTGATTTTTCT
TTGCAACGAACATTGATGTCTATTTCATATGTGTGCAAATTTCTGTGATGGAATGACATT
CATGGAGGTCCGGGCAAAAAAATCGATGCTCCAAAATGCTTTCAAAAACAGTCTTTTCGG
AGCATTGAATTTTTTTTTTGGCACAGACCTCCACGAATGGCATTCCATCGCAAACATTTG
TACGGATATGAAAAAATACATCAATGTTTGTTAGCAAAAAATAAGATTTTTTTGAACTTC
TTTAGGTATTCTTTCGGATTTACTGCATCAAAGGTGCATGTGAGCACGTGCTAACAAACT
CCATGTCCCTATTGTATCCCATAGAGCACCCAAATTCCACTCTATACATGGGATAATTAA
GTCTAGCCTGTTGGAACTAAATGGACCTAATAGAGGTAAGCACATATCCATAATCAGTTT
ATCAGCTTAACTCTTTAACTAACTCCTACTCAAATCTGCACTGTGTTTCAAGCACCCCGT
GGAAGAACACGTCAAACTTCTGTCTGCTGCTTTCACGCAAAACTCGGAGTGCTTTCCACT
TCTCACAACCTGAGCAACATTTCCTGTACAAGGAGCTCAGACACCACTCTTAAGCCAACA
CCCATTAAAAATGAACACTGTTTTTGAGCATTAAAGTGAAGAATGCATCAAGATTCCACA
TGCAAGAACACTGCTATGGACAGCCTCTTGTATCAGAGCCGATCACCGTGGCTTTCACTC
CAAGGAGAATCCTCCATGCTAAAATCTGGTAGGTGCTCATATCACAGACAGTGCGCTTCT
TCGAAATCTTAGGTTCTCTTGGAGTTGTGTAGACCATCGAAATATGTTCCAGGGAGATCA
AGGGTCATGGCCTTCATCAAATATGGTTCAGACCATGATGCCGCACAAGCTTTCAGGAGG
TTGCCAGGCCGATGAATCTACAACTGCTTCTCCCAATTGATATCAGAAGGTTATCTTCTA
CAACGAACACTGTAGTGATTTCCTTAGTCAGAAAACACTGTAGTGTGTCTGCTAGTCAGA
AAAAACACGGTGGTGCTTCCATGTTCTCCACCTGAGCGAAATCTTTCAAATCTAAGAGCT
CATAAAGTTCAGGCATGGTACTCTGAATTATATCCATAATCCATTAGATGTTACTAGATC
AGTCCAATTGTAGTAAACTGGACTGCTGATTGATGTCTGGAAGCTGGAGATACAAGTGTG
TTAACTTAGCAGCTAACACATCAGCCACGTAAAGAGCTAACCATGTGGGTAATTGGCCAA
CAATAGCAATCATGTCCCAGCCTTACTCAGCTCCTAGATCAACTTCTTCATGTGCAAGAA
ATTGTCCAATGCTGACATCTAGTATCTAACAAGTGATAACTGATAAGTCTCTGAATAGCC
ACATTCTTCTCTAATATTTTGCAAGAGAACAGATCCACCTAAAGGCTTCATGCACCAGAC
AGACGGTCCAAAATATGCTAGAAAGTAACCAGACTAATACCGTAAAAGCTTAATTAGAAC
TTACGCAAATGGCCAGAGCAAGAATTTTCTAATCAAGCTCGCACAAGGTCTGGAAGTTTG
AATTCCTCACAACGACCAAAATAAGCATCAAGATAAATGTAAACTAAAAAACTGATGATG
CAAATACCTGGTGCAAACCAATTCAGATGAGACAGCTCATGCTGTTGAACAACCGTTTAG
TTTAACAGCATAACTTACTACACATAAGTTCAAAAACAAAAAGAAACGGAATTATGGTCC
TAGATAATATATAGACTTGTCCACACTATTATGGTTTTAGAGATTTAAGGAGGTAAGATT
AGTTCTCTACTTCTCTTACAGCAAACATCACTTACTGGTCCCTATCTGCTGATAACAGCA
TTGGATCCACTAATATGCAGCAGTTGACATGAATCTAGTCAAACATATAATCACTACTTC
AGACAACTTCGACCTATGTAAACCTAGACACAGAAGATATGGTCAGTGAGGAGAGATGTC
ACATAACCAGAAGACTTCAGTTTTTACAGAAAATCTGCAGCACGAGCCTGAATAATTTGC
TAATTATATAAACACTTAAAACCACCTTAGCATTAAGTGACTAACATCCTCACCATAGTT
TAACATGAGAGAAACCTACACTTGGTTATCACCAAGAGTGAATTTTACGCACATGTACTA
CATGCACTATCTGTATCATCTCACATTGCTCATTAATTCATTGGGTAACCGCATGATGGA
AGTTATCTGTAAATACACACATTCAAAGTTCAGCAGTTAGACACCCACTGCTTCACATTA
AATCAGAAAACGTGCTCTATATGTGACACGATTAAGTCACTCTGATTTTCCAAAGTCGAA
GCCACGTTCAAATAATTGCTAGTCATGGTCATAGTCATAGATCAATCTAACAAGGAAACC
TGGATATCCTAGTAACATGCAGAAATCTGGAGCCAATATGTAAATAGTAACAGGATACTG
CCAGCACAAATATTATCAACTAACACAGAAAGTATAATTATTCAAAGCATAAAGAAGTCT
AGAACACAAACAAGTAGGTAGATAAGATATTCTAAACCATGTGATATGATAATTAACACC
TAGAAGGTGATTCTTTCTCCCAGGAATGTAGCAGCTGGGCTCTTAGCGGTACTGGAAACG
GTTCTTATCATATGTGCCCCACGAAGATTCAGGAGGGTGTGAAGGACCTTTCTCAGAAAC
TCCCTGATAACAAAACAGTACATTTTGAATAAAATATAAAATAAAGAATGAAACTGTCTA
AGATTGTCCTGTTTTAAAAGATCATACCGCGTGTATATTGTATTTATCTCCATATTGAGT
AGGAAAGGTAGCTTCAGGACTGCCCAGCTTCATCCCATGTGCTCCACCTTAGAGAGCAGG
TAAGCATAGCACCATGAGAGCGAATTATTTTCTTTGTTCCACGAATATAAATTGTTAATG
GCAATGCATCCAACGATGCTGATAAAGAGGTAATATTCAGGTAGTCTAGCCTAAGAGAAA
CAACATCTAGGATAACTCTGTTATGCTTATGTTATAAAGATGATGTATGCTCTCAATGTT
GACAAGGAACACTCCTGCTTTTGCTTTGTGGGTGGTATGGTATTAGAATTTATATATATT
TATTGGTCCATTATCTTTACTAGTTAAGGGGAGTCTGCTGTCAACCTCCCCTCCTGCGCT
CCCCTTCCGGTACACTTTCTAACCACGCACGCATATTAGCAGAACACTAGCAAAAAAAAA
TCCCACGCATGATTAAACGACTCGGGGAAAAGGAAACTGCCGCAACCGACGCATAGACAT
CCCCCCCAAGCCCCCACACACACACCATCTCCTCCCAACCCTCTCTAAGGATCCGGTCTC
TCTCCCAAGAAAAGTTATTGCCGCCGAGGCGACCGTGTCGCATTTGCCCTTTCGTCCCCC
CGGTCGCAATCTCTATAGGCGGTCAAGATGCCCACAATGACCATCATGGCCTAATGCCCT
TTTGGAACCCGTCTGTTGGCAGCACTGGCCCATCTTCTAGTGCTGGATGCAGCGGCCATG
GCGAAGGACAAGTATTCACCGTACACCAACTGACCAACACCATCACCGGCTTGCAAGGGG
CCCATCGACTGTTGTCGTAGCCTTCAAGTCGGCCTTGGAGAAGACCTAGAAAGGCGGCCT
TGGAGAAGTCCTAGAAAGTCCAAGTGGGTGCACAGTGGCTGCGACAAGGGCCATCATGAG
CAACATCACTTCAATCACCATGGAGCGAACCGATGGGATCGAGCGTAAGTATGTGGAAAT
GGAACATAAGTACTCATGGTATCCACTTTATAAGATTGGGTGAATTTTGGCGGTGGACAG
TGATAATGCGGGGAAGCTTTAGTTTGGAGCTTGCTGGTGATTCTCTGGGTAGCCTTGCTG
GTTCTGAATCCAAAGTGCACGATAGTCCCAAAGAGTTTGACTCTTTGAATCAGAGGAAAA
CAAGGCTGGCATTAGCCCCCACAAGCACTTTGCCTGCACGTGGTAATATTTTCTGAACCA
TGAGAAATTACAAGGATTTCACATACAACGTATGCTCGACATCTCCATACTGGAGATTTC
TACCGCGTTGTTTGTCACTGCAATTTGATTTTTCTTTCTTCTGTAGCAATGCATTGCACT
TAAATCTATAGAAGAACAACATTAGTGTTGAAAGCTCTTGGTTTCCCCAGGTACACTCGG
ATATATATTGCTACAGGTGAAACTACGATGGTGAAAAAAGATTAACTGCATCGAATAAAG
AGTCCCTAACACTCAACCCAAATGGCAGCCCTGGACCATCTTGTTTCTGTCGTACGTGAT
GTTTTTATTTCCTGTACTAATGGAAACATGGCTAAAGTTGTTGAAGGACACCCGCATGCA
TGTCTATTTCTGACCTTCATAATATGAATTAATGAATATCATTTCTTCTTGCTACCATGT
GTATACCCTATTAGAACAATGGTTGCCAGGTTTCCGGATCGGCCAGGACGAGGGTCAAAC
GTGGCTAAATCAATGGATCGCAAGGGGTAGTCTTCGGGCCAACAATTTGGGTCACGGGAC
ATGATCCCGGATTGGCGGCACATGATTGTATAATACTGATTATTAAGTATAAAAGTAGGC
ACATCTTTAAAGAAAACAAATATTACACAGCTGCCCACTTAGGCCCGTTAACCCTTCTTA
CATGACCTAACTAAAGTGTGAGTTCCCTTCTCCACCGCCACCACTTCCTTCGTTTTCATT
TTGCCTGTTGGCTGTTGCACATCGCTGCCGCCGCTACCACACTGTTGTCTTTCCATGGCA
ACTCCTTTACTCCTTTGCCTCATCAATTCATTACATCTCTATATCCTCCAGTGGCGGACA
TGGTGATGAAGAACTGCAGCAATAATGGAAGCCCGACGATGGGGGCGGGCGGAGGCACGA
GTCCGACAATGTTCTCTTTATATTGATTTATTACTTCCCAACATCTCTTCTCAGTTCTCA
CTTCTGCCTCTCTCCCCACCGGGGTCACCCAACGGTGTTCGAGATCGTGTCCCGGCCATC
GATCCATGTGGACCTCGGAGTCAATCCCGACCCTCAATTTGGGTCAACGAACCTGGAGCG
TGGAACACGGCACCGTCACGCGATCTGGGCTACTATGATTAGGACATGGTTAGCTGGGTG
GACCGTGAGAAGAAAATAGATATGTGTGTGCACGCACAAGGCTGTAGTGTATAGCTCTCA
TGTAGATGTATATGTTTGTTTTGAAGAATCACGACTAATGAGCAAGAATGAACCCAGCAA
AATAAACACCCGAGGTTAAAATGAAAATTTTACATGATGCAAATGTAGGTTAATGGGCTT
CCACTTAACTATACAGTTTGATACAAACAAACTTGTTTGGTCAGCAAGAAAAAAATTAGT
TATGTTCATGTGGTTACTTCAATTTTTTGATTTGGATATACTTTTTGCTGCTAGATAGCA
AAGCAGAACAGATAGTGGAATGAGATGTTGCTCATGTTGACGCAGAGTTGGGACCACTTT
TAGCACCGAGGTCGGAGAAACAAGGGGAAGTATAGTGCCACTGGATAGATTTGGTGGCTG
AATTTCATGATAGTGCTAGAAGCTGTGCATTACAAGCTCCGAAGAAAGAATTAATGCTTG
TTCTGTTCTCATGGTGAAAACCGCTCTGCTTCATACAATCAGGTTGTTATGTCAGATTAT
ATTCAGATGGCAAGCATGAAAACAGAATTAGTTCTTACGGTGATTACTTGATTTAAGCCA
AGGCACTACATCACTCGTTTTGGAATTGTTATCAGTATTTGACATGTTTGATACTCCATT
TCCTTTGATGGTATGTGTTAAGCTTCATGCACTAGCCAACACAACCAAAAGTCCGAACTG
ATGGAAAGGGCAGAGCAATCCACATATACTGTAACACCCCCTCTCACGTGT