morexGenes - Barley RNA-seq Database

Contig contig_235775

Source Contig contig_235775

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_235775 (6871 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_235775

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_33258	5	2501 bp	MLOC_33258.3	Available	Available	LOC_Os07g46900.1, FRAME:+1, EVALUE:9e-85, 13107.m04970 protein transposon protein, putative, unclassified, expressed
MLOC_33260	12	1868 bp	MLOC_33260.2	Available	Available	None
MLOC_33259	1	629 bp	None	Available	Available	None

CDS Structure of MLOC_33258

CDS Structure of MLOC_33260

CDS Structure of MLOC_33259

Contig Sequence (6871 bp)

>contig_235775 6871 assembly3_WGSMorex_rbca.fasta
CGGCGTCACACCCTCGACGGGGTAGCGGCTGGCTCCGCCTCCTTCACGGCTAGGCGGCCT
CACGTCCTGCCGAAGCTTGTCGCCCCCGCCGGCGAACCTATGGCCAGGCGAGAGTTTTGT
TAGAAGCGAGACGAGAGCTCAGGCTAACGAAAAATCAGTGGGTGCCATAGGATTGGGCCG
CTTGAGCGCTTTGGTTGTACCCCAGAGAGAATGTCGTTAGATCGTCAACGGACGGCGCAC
GGCATACTACTTCCCTATGCAGTACATTCATCTAAGTCAGACGATCTCGTTCCTGAATAC
GAAGTACTACGAAAGCTTGTCCAAATTTGTAGGTGCCACATATGACAATTGTTATGCCTA
TTCATTGTACATACACAGTCGTATGAATTGTTCTTCTGATCAATGACAAGTAGGGACTAA
TCTGGAAATGATCGAGGTACCAGGATTGGCAAGTTCGTGAAGATTTTGTGCCGAAAACAA
ATATGGTTTTCATTACTGAAGAGGAAGGGTATGACTTTTATTGACAATGTGCAAGCGCAG
CGGGTTTTGGTATTACCAAGCTGAAGAGGAAGTCGATGTCGCGTCTCTATGCATGCTCTC
GGGAAGGTAATTCTACATTCTACAAGCCCGGGGAGGAACGGAAATGTGTGAAGATGTCCA
AGAGGGTTAACTGCAAGGCAGCGGTTAAGATGAAGAAGGGTATGACTTTTATCGACAATA
TGCAAGAGCAGCGGGTTTTGGTATTACCAAGCTGAAGAGGAAGCCGATGCCGCGTCTCTA
TGCATGCTCTCGGGAAGGTAATTCTACATTCTACAAGCCCGGGGAGGAACGGAAACGTGC
GAAGATGTCCAAGAGGGTTAACTGCAAGGCAGCGGTTAAGATGAAGAAGAAAGGGAAAGA
ATGGATATATGAGAAAGTACTATTAGAGCACAATCATACTCTGAATCCTGATGCGTGCGA
GTTGAAGCACATTCGTTCACACAAGAACAAAGACCCTGTTATCATGGAGCTCATTGATGA
CCTGGAGACCTGCGACGTTTCTCCTAATGCCACCATGAATGTGTTGACCAGGTTTCATGG
CAACCGTGACCACATGTCACGGAGTGAACGTGACCTGCAAAAAAGGTAATTGTGTGACTT
TTCATTCTGTGATGCAGCAATACATACTGTAAAGCCTGTGTGGTTGTAACATATTTTGTT
GCTTCTGTGAATATGAATTTTAGAAAAGCTGAAAATGTGCGAAAGGAGCGAGCGGATGAT
GTGAAAAAACTAAAGGCTTTCTTCAGTGAGTGTAGAGCACAAAACAATAAGTTTTATTAT
GACATAGATCATGACTCCGAGGGCGTTGCGAAGAATATATTTTGGAGTCATGCTAGCTGC
CAGGCTAACTATGCTGAGTTTGGTGATGTTGTTACTTTTGATACAACATATAAGTGCACT
TTTTACAAAAAGCCGTTAGCGATGTTAGCGATGTTTGTCGGGAGCAACCACCATTTGCAG
AATGTCATTTTTGGGTTTGCACTCCTCGGTGACGAGAAGGAGGATACATTTGATTGGGTT
TTCCGTACTTTCAAAACGTGCATGGAATATAAGGAACCTCATTGCATACTTACATGTATA
CTTGGTCTTTTGGTTGCTACGTACATGTCAACTGAAACAACACGGTAAATATTGCTAAAT
GACTAACATCATCACCTGCAGATCAAGACCAAGCAATGGGAAATGCCCTTCCGGTAGTGT
TTCCAAACACTATTCGTAGGCTATGCAGATGGCATGTTTGGCAGAGTCACAAAGATGGAC
TGAGGGCATTGTTTAACTTGCATGATGGTTTGAAAGAGAAATTGTTGACAGTAATAAATC
ACCCTCTCACCCCTGTGGAGTTTGAGAAGGCATGGTGGGACATGGTGAATGATTATGGAC
TCGAATCAGATCCTACAATTGGCAGTTTGTATGATATGCGTGCAAGATGGATCGCCGCAT
ACTTCAAGGATGTTTATTGTGGGAGAATGACATCTACGCAACGCAGTGAGAGCACAAACA
GAATTGTGAAAAGAAACCACGTTGACCCTACAACACCTATGCATGTGTTTGCCAGAAAAA
TGTTCCAAGTTTTGCAAAGGAGAAAAGAAGCAGAAGCCCGAGAGACCATTGAATCACAGG
TATGACGTCTCATCTGGCACCATCTTTTAGTATGCCTCATTCTTGAATAAATATGAAACT
CTTCGAAACATATTCATTGATGTAGGCCCGACGAAAAACAATAACCAACTACCCTCTGGA
ACATCAGCTGAGCAGAGTCTATACCCGTGCAGTATTCAGGAAGTACAAAGAAGCATATGT
TTATGGAACATCTTTTCTTACAAAGAAAGTTGGCACGGGTCGTTTCCTTGTGCCGTACGG
TAGAGACAGGCCAACTTTTTCATGGTCCCAACATGAGTTCAAAGTGGTTTTTGATGAAGA
AAACGAAGAATACAAATGTGAGTGCAAGCAGTGGGAGCACACAGGTAAGTAGAGTATGAT
TTCTCGATTTGTCTAACGCAAAAAATATTAGGATAATGCACATTAGTTTTCTATGTCTGT
CATTGCACAGGACTGCTATGCCCACACCTTATCATAGTGATGACAAATGAGCAGATTCAG
AGGCTTCCAAGCAAGTATGTGTATAGAAGGTACACAAGGAATGCACGAATTGATCCTCCA
TATGACAGGAATGACACTCCACCGATGGGACATCAAATAGTGGGAGGCACTTCAATATGC
TCAGAGAGGCTTATGCCGTGTTGAAGGAACTTAAGGTGGATCAAAAGCTGGATATGAAAG
AGTCATGACCGTGTTGAAGGAACTTAAGGTGCAGGTTTGGGGATTGCCCCCTGATGTCAT
GACTGTCTTTGATGATGTAGGTTGCAGTGACCCAGCTACCAGCGAGCTAAATAATTAGAA
AGCCCCGCCAATCTCCAAAGCGAAGGGTTCTAGATCAGAACCAGGAGCAAGACCCATCAT
CGGCGCACGAGGGCCAAAGTTGTGCACAAGAGCTTGCAGCAATTGTGGCCTTAAAATGGG
TCACAATAGGGCGTCATGCCCGAACCGAAAAGAAAGCTTTGCAATTGGTGGATCCACAAC
AGCCAGGGGGAGGGGAAGAGGAAGGGGCAGGGGAACTCGTCGCTGTTTAATACATGACGA
GGTGGAAGATGAGGAAAATGAGCAGGAACAAGATGATCTGCCTTATGGTGAATCATCTTG
TGGTTCAGATGATAGCAATTAGTCCTGGTTTCTATGATTGTCATGACTATGTTGTGCTAT
TCATTACGACTCATGTATCCCTAGTAGTCTAAAAAGATGTGAGAATGTCGTTATCTCAAA
AATCACTGTTCTGACATTTATTTCATATTTGACGTGTGCAGTGATGGGGACATGTATAAT
TTGCTGGAATCATCTTACTTTTTCCTGAATTATTGGAATTTCAAACTCTCAATTTCATCG
TCCAGCTGGGAAAACCTTGGTCTCTACAAAAATTGGTTGAAAAGTCTTGAAATTTCCCAG
TTCACTCTTCGCTAGATAATGACTTACTGGCAATTCTTTATGAGTTTTTCTACATACTAT
TGTTGCTGGTTAACATTAATTAGTTGCCGACATGTGTTTCTATTTCTCCAGCACATTTTT
AATTTTGAACTATCATTTTTTAAGATAACCAGCTGAAAAACAAACATTACATCAAAATTT
CTGTAGTTACATGAAGTTTTCGTGCGTATGCTAGTTAGTACCCATATTTCGGATTTACAT
ACTAGCTAGTTAGTACTCCAACATGAACATCATACTGCAAAATTATGGTATCTATAAAAC
CATATTTCGGAATAATCTAATTTTCCACTCGTAGACATCTAGAAAATTTATGAATTTAAG
GTTTTGTGCAATATTTTCTGAATAATATTAAGTGGTTGTATGTTGGATGAAAAATGTAGT
CAATCCCGACAAGTTCACATTATGAACTTCATGTCACATACTCCCTCCGTTCCTAAANNN
NAGTCTTTTTAGAGTTTTCACTAGAAAACTACATACAGATGTACATATACATCTTTTAGA
ATGTAGATTCATCCATTTTGCTCCGTATGGAGTCATCTAGTGACATATCTAAAAATGCTT
ATATTTAGGAATGGAGGGAGTAAATGAGAGAGTGCATGATGTGCGGCTGCAGCGGTGGAA
CACATAAAAGTGACTTCGTTATCATTGGTAACATACATTCATTTGATTATAACAACAAGC
GTCAAACCAGGCATACACAAGTACTCCTGAGTATATTACAACACGGAAAGAAAGTAATAT
CCCTTTTGGTTCTAAACATACGAGGAGCTACCTAATTTACATCAAATTTTTCATTTCCTG
AACTTCTCTAGTAACTGAGGTAAGGGATTGATTTCATTCAACTCATGGAACAAGATTTAG
GACATAACTTCGTCCCTGTACTGACTAGCATTTTCCTACAAGAGATAAATTATGTATTAT
AATTTATAACTCAAAACAATAACAGAATAACATCATCCAATAACAGGGGAATTGACGACA
AATACCGGATTAATGGTACAACACAGTTGACCAACTTCGCCATCATAGTGGTTCTCTTCC
TAAGAAAACACTAGGATATTCATCGACACTGTTCTGCGTTTTATTCGCCGTAGACATTTT
TTTGGATGGAATCGGGGTGAGCTACATAAATGGAGCATAAAACTGATTGATGTATCTTTT
TAGTGGACAAATGTCATTCTAGTAACACGGGAACAAGAAACAATCATTTGTAATCAGCGT
TAAAATCAACCAAAAGAAGCCACTTTATTTATTACTTCGTAGCAAACATATTTTAGAAAA
ACTTAAGACTTTCAAGTAAAAAAGAGTTGAAAACATTAAATCAATTTCATTTTTGATACT
GACTTCTAAATGTTGTGGAGTCTGCTCCCATACTTGTATCGAGTTTCCGGACGTAGGTGC
TCCGGTGTCTGATCAAACGTAGGGGTGTGTACACACTGAAAGCGCAAAAATTCAAAGGCA
CAACATGTAACAAGATTCTTAAACACATAATTTCTTAAGAATGTTGTTGTTTCCACAAAT
GCACCAATGTACCTCGTGCTGACCAACCATCTTTTTCATCGCAGCATCTCGTAGTTGAGG
AGACTCTTTCCATGGTTCCATCACATTTTCAGTGATATTTGCTAATCGGGTCAGCGAGCC
AGTCGCATCATCTGGTGTCTTGTCAAAGACAATAGGAGGTACATTCTGAATTTGCAAAAA
GGCAGAAAGCACGTAACACAACACGCGAATCATACATAATTCTAGGAATTTTACATGAAT
CGATAACATTAAACCACTCTACCTCATGTTCTTTTGGTGTCTCGTCATAAATAGGAGCAC
CGAGTCCAGTAAACTCTGAAAAGATTTCGTTACTGGGCTCAGTTTCATACTCGGTGGTAT
TTGCATAGGGAGTTTGAGGTACCATCGAGTGTAGTCCATTAGTCATGCAAAGAGAGTGCG
GCAATGTAAAAAGAATTGACTACTTGATGGAAGATGCACAAGATCACCTTCGTCAGCACT
AGTGGAGGAATCCACACGCTCTTCAGCGAAATGTCCTTCATTATATAAGTTGCCCATTTC
ACCTATAAGGAAGACGATATGGTTACAACTGCATGAAACAAAAAAACCGACATTTTATGA
AGAAGAACATACCATTATCATAGCAAGTTTTGCACATGCCATTCCATAGAACTTCGTGGC
TGGGATCATTATAGATACACTGTGAATTCCACTGACTACCAAATGTTCCATCTAAAATTT
CATCTGTGTGATAAGGCCACCTGTTTAAAAAACATAGGACAATGATAAATAAATTGTAAA
TGGTGAAAATACCTTAATTTTGGTACCTTGTCGAGATTTCAAAAACCCAGCAGCCATAAG
AATCTGAGTGCAACTAAGGTTGCATGTATCTAAAACATTGTCACGCCCCTCATTAAGCAT
CACATTTCCAGAGTTAGCAACATCAGTTGTGGGGCATGGGTGCTGCCTTTCTTCATGCAT
ATTTGAATCTGTTTCCACACTTGACAAGGGAAATTGAGCGCCAGTCGGAGCAGCCTTTTT
GCTTGGTGGTGGTGGTGGTGGCGGTGCGTTCGATCGAGAATCCAGCACTATGCTCTTGAT
TTCCTCAGCTACCATCATCTGTCGATCACATATGTTCAGGACTAGCCTATGGATGTCGTC
ATCGCACCTTCGCAACGCCGACATGGCCGCTACCTGTTGTGCCTCAGACAAATGATCAAA
GAAACCCGCGAGATGATGATGCATGCTAAGAATAGGTGCAGGGCAAGAAGGATAGGTCCC
ATATGGAATATCTGAACTGCTTGGAGGAATGCCACCAGTTCGAGGGTCTGCACCCTCCAT
GTAGCAACTGCCCACCTCACTCCTACAAGTTGTAATATAAAAACACATGTTAGAAGATGT
CATCAATGAAATGTATTGCACAATGGAATGGTTGAGAAATTCGCTGGCAAAACACCAAAT
GTTTCAACCCCGTCAAGAACTTTTTTATCTTGGTCGATCAGACTCAACATTTCCTCCCTC
GTAATATTATTTATCCGTGGTGTGATCATGTTATTGGTACAAGGCTGTCCCAACAAATTA
TCCAAATAATAGACCTATAAAATAAAATACTTTAATAAACTCATGTCTACACTACCAATA
GGGTATGATAAAATTTGTTTTGATGGTTGAGTGCAAAGAAGGGATGTGATACTTGTTAGA
GTTATAATACAAGTGATGTACCCTTTTGTATTTATCCCAATATATAAGGGGTTTTCCTGC
ATATAGTCCATAACCTGTACATGTATATATA