morexGenes - Barley RNA-seq Database

Contig contig_2357452

Source Contig contig_2357452

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2357452 (478 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_2357452

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_33254	1	365 bp	MLOC_33254.1	Available	Available	LOC_Os07g16950.5, FRAME:+3, EVALUE:6e-18, 13107.m01773 protein Mak16 protein domain containing protein, expressed
MLOC_33255	1	249 bp	MLOC_33255.1	Available	Available	LOC_Os07g16950.5, FRAME:+3, EVALUE:2e-12, 13107.m01773 protein Mak16 protein domain containing protein, expressed

CDS Structure of MLOC_33254

CDS Structure of MLOC_33255

Contig Sequence (478 bp)

>contig_2357452 478 assembly3_WGSMorex_rbca.fasta
TGCTCAACTAGATAAGGTTATTTTTCCTGATATACATTGCCATGTTCTAACATCTTCCTG
CTATCGATCCGAGTGTTACCTTCCCATGTTCTAACATCTTCCTGCTATTAATCAGAGTAT
TGAAAGTGAACTAAAGGAGCGTCTGAGAAAGGGTGTCTATGGTGAAATTTATAATTTCCC
CTTCAAGCAGTTTGATACTATCCTTGACATGGAAAAAGATGAGTTGGCTCCTGAGATAGA
AGAGGAAGAAGTAAGACAGTACCGACTCTGAGAATCAAGCTAATTTTGTTATGTTCTCAC
TGCTCACAATCTTTCCCATATATTGTGGATTCACTTGCCAATGTACAGGAAGGCGAGATA
GAGTATGTTGAAGGTGATGATATCGAGATGGGTGACATGGATGATATGGAAGATTTTGAA
GGCTTTGGTGATGAAGATGGTAAACATTTCCCTTGTTTCTACTGATTTTAATTTTGCA