morexGenes - Barley RNA-seq Database

Contig contig_235012

Source Contig contig_235012

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_235012 (1714 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_235012

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_33170	1	643 bp	MLOC_33170.1	Available	Available	None
MLOC_33169	1	449 bp	MLOC_33169.1	Available	Available	None
MLOC_33171	1	747 bp	AK377013	Not available	Available	None

CDS Structure of MLOC_33170

CDS Structure of MLOC_33169

CDS Structure of MLOC_33171

Contig Sequence (1714 bp)

>contig_235012 1714 assembly3_WGSMorex_rbca.fasta
CTCTAGTGCATAGGAGAGCCCAACCCCCCTCGGTCATCTCTTACCTCCCGCTACAGTGGG
AGCAGGGAGTTGTGGCGTCCATCCAGGCCGCCATGGCCACGGATGGCATCGTGTCGGCCA
TCCCACAGCTCCCCGTGTGGATAAGAGTCGCCGCCGTTGTCGTTCGATGTTGATTCGGCG
GCCGTCGTCGTTCTCGCGCCCCTTGAGCTTGTCCAGGAGAACCGCCACAACCCTCTTCGT
CCATTCAGATCACCAAATCGAGTCGAGGCAGACCGTATGCTCGCCATCGACATTGTCTTC
TCCGCGTACATCGTCTTCGTCCATCACCGATTGCCACTGCTCCGGTCCACCTCCGAGCTC
CTCGTGAGCTTCTCCCTCGAATCCCCCTTTTCCCTGTCGAATCCGTCCCCGTAGCCGTAG
TGCCGTACGTCGCTGCGACCGAGCTTGGCCGGAGCTCCACTCACCGTGCGGCCACTGCTC
GCGACTGCCTGTTGCCTTGGCCGTGCGCACCCGCAGTTGGTGGAGCCACTGGCCGCGCCC
ACCTACGCGTGGCCGCGCCCCTGCGCGCACCCCGTCGCAGCCCGAACGGCCCGCCGCTGC
TTGTCGCCGCTCGCCCTGCTCCGCTTTCTGCTGCTGCTACTGTGCGCGTGCACTTGTGCG
TGGCCTCGCCGCAGCCTGGCTGCATCCGCATGTGTCACTCGTAGCCGCGCCTGTCTGCTC
TTCTTGCCGAGCGCATCCGTTGCTGCTTTCCACTGCATCTTTCTAGCTGCGTCGCTGCTG
CTCTACATGCTACTCGCCACTGCTGCTCGTTGTGTGCTGGCGCTGCTTGCTCTTGCCTCT
AGCCATTGCCATGGCCACGGCCACGGGTGTGCTTCGTGTGTGTGGTGTGTGAGTCTGTTT
GCGTGTGTCTGTGCACGGCTGGCTGTGCCACCGGTCGGCCGTGAGCTTATTAATTATGTT
AGACTAGTACAAATGTCCGTCCAACGAGCTCTTTCTCAAACCTTCATGTGTAATTAACTA
TACCGGAAGAAGGAGACACGTTATAAGCAGTTAAAACTTTGCTCTTCTACAAACTACAAC
AAAAGATTATGAAAAATTTATTAATCCAATTATTCAATAGAAGATAATGGTACAGTTGTG
GGTAATGGAACATACACATTCTATNNNNTACCCTGATTTTTTAATTTGGAGGCAGTTGAC
AAAAGAAATTTTAGATAAAAATGACCATTTTGTGTAAGCAAAATAACACAAATAACAGGA
AGAAATAGGATACAGAGATTACCACAATGTCACTACATAATCTGACTTCATCTACCAAGA
CTAATAGTTGTTCTCTTTTAGTGATAATTTTCTATCTGGGAGAGTTGCAGACTTGTTCGT
AACAAAGACAAAATAATTTTTCTGAATCATTAATTCTATGCACCACCTATCATTCAAATA
GGAATATGCAGCACTATGATTGAAGAATAGTGAACCTGCCCGAAAAGGTTGGATGAGTCA
TAGTTTTGTTGGGGCTAGAGTACCTCCATGAACCCACATCATAACCATATTATGTCATTC
AGCAATCGAGCAGTGTGGTTGAATCCATCATAATCGATGTCCTTGCTGTTGGGTCCATGT
CTTCCCGCCTAGAGGGACCCCATCCTGATAGAAGTTTTCGCCGTTGAATTCATGCCTTCC
TGCCTACCCGACAACACGCTGATATGAAGTTCTG