morexGenes - Barley RNA-seq Database

Contig contig_2340039

Source Contig contig_2340039

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2340039 (420 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_2340039

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_33042	1	419 bp	AK375959	Not available	Available	None
MLOC_33041	1	322 bp	MLOC_33041.1	Available	Available	LOC_Os04g59000.1, FRAME:+2, EVALUE:8e-14, 13104.m06215 protein protein kinase family protein, putative, expressed

CDS Structure of MLOC_33042

CDS Structure of MLOC_33041

Contig Sequence (420 bp)

>contig_2340039 420 assembly3_WGSMorex_rbca.fasta
AATTGTTTTCTGTCTTCAATCAAGCTGAGAACCAGCTGCATAGTGTTAGTTGAGTTCAAT
CAGGAACGCTGGTGAACAAGGCGGAGGACGTGCTGCTCCACCGCCGGATCCTCGCCAAGT
GCGCCGACCCCGACAACCGCCCCGTCTTCCACGCCCGATTCCTAAGGGTAAATTCATCCA
TCCATTAAACTCATGAAATCTTCCCTGCACACTGCCGCTTACTGTATTATCATGCTCCTC
TGCTTCCATGCGAAGTACCTTCAGCATGACAAACCTCTGGCTCCAAATCAAAACGGTAAT
TGTGGGGGATCACTGGCTCCCATGCTCACGTCGAGGTCCATGTAGTAGCTGCATCCCCGG
CGCGCGCGGACACAGACAAACAAACAGAGAGAGGGGTGTTTGTGAGGTGAAAACGCAGGC