morexGenes - Barley RNA-seq Database

Contig contig_233969

Source Contig contig_233969

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_233969 (1391 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_233969

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_33037	2	445 bp	MLOC_33037.1	Available	Available	LOC_Os01g64920.1, FRAME:+1, EVALUE:1e-86, 13101.m07004 protein nuclear matrix protein 1, putative, expressed
MLOC_33038	1	111 bp	None	Available	Available	None

CDS Structure of MLOC_33037

CDS Structure of MLOC_33038

Contig Sequence (1391 bp)

>contig_233969 1391 assembly3_WGSMorex_rbca.fasta
ACACATCCACAAGGGACTATGGAAATAGACTAGGACTAGGAATCCTAATACTANNNNNNN
NNNNNNNGGCTTTCTTTCCTAATCCTACATGAGCAACATGATTAACATCTACATGGCGGA
GATCGCGAATTTCCTCAGTATCACGCCTTCAGTCGACACTAAGGCGATTCAGGTGAGAGT
AATGCAGCTCTTTGTTCTTTGAGGCTTACATTTGTTGACTATTAGCTTTTGTTACTCACG
GATGACAGATCTCTGGCGTGTAGTGTGGTGAGAATCACAAACTCAGATCCAGCGTGTCTC
ATCTTTTGTGGGATTATAGGGCAAGGGCAGCTACCACGAGTGGGTGGAGCTCCTCCGTCT
AATTGTTGACTTGGTGGAAGCTAGCTGCTATGCCGACAATCCAGAGTGGAGGTTGGTTTT
ACACTTTACTGTCTGTGATATACTTTTGCTATGCTGATTTATACGAAAGCATTAGCCACT
AATAATCAGTAGCTATTTCAGTTAAACATTTTCCAGCACTGTAAACAGAAAGGAATATTT
GATGTAAAATGCTCTTCATTGTACCGAAAGTATTAGATGTTGTTTTAACCTCGGTATTAG
GATATCTGATATATAAATTACCTGACAAATTGCTCCCTGGTAGTGTTGATGAGCAGTTGG
CAAAGGATGTACAACTTGTAGATTCCATTGCTGAGAAACAGGCGCAAATTTTTTCAAAGG
AGTGCAAGCTTTTTCCTGCAGATGTCCAAATACAATCAATTTACCCCCTGTAAGTGCAAC
CATTATATTCTTGTCATCGATTGTATTATTTAGAAGTTGTAGAGTTATAGGCTTATAGCA
CCCATATAATTCCTTAAATGGTATGAATCTATGTTGTCGTCTTGTGACTCCCAGTTGACA
AGCAATTTCAAGAACCACCACCATTTCACTGAGTTAAATTATCATTTTGCAGGCCTGATA
TAGCAGAATTAGAGTTGAAGCTCTCTTAGTATACCAAAAAGATGTCAAATCTACAACAGA
TGGTTCAGGAGCTAGCCTCAAAGGTATTAAAATAAACTTGTACACTTTTAGCTGAAATTC
CCGTGAATAGCATGTTTGTTAGTTTGTTGACAGTACTCTGCAGTATACTATTTGTGCTAA
CAGTGTAGTCTCTGCTGTCCAGTATGACTATAATCCGAATGAAGACTATGCCGAGACAGA
GTTTAAGTTGAGGAAACATTTGCAATCATTTCTTGAAACAGTAAAATCCTTCAATATGAT
ATACACTAAGGTGAATATCTTATGCATCATTATGTAATTTTCTCCCTGTATCTCCTCTTT
ATATTCCAGACAAGCAACCTTGACATGAATATCATTTGTACTTCTGATTATCATTTTCCA
TGTGTTTTGAG