morexGenes - Barley RNA-seq Database

Contig contig_233941

Source Contig contig_233941

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_233941 (2265 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_233941

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_33035	1	436 bp	MLOC_33035.1	Available	Available	LOC_Os12g09089.2, FRAME:-3, EVALUE:1e-23, 13112.m00965 protein protein kinase PKN/PRK1, effector, putative, expressed

CDS Structure of MLOC_33035

Contig Sequence (2265 bp)

>contig_233941 2265 assembly3_WGSMorex_rbca.fasta
TTTAGGGCCAAGTTGGAGACCATGAAAGAGATGTTGTTCAAGAAGCACATCCTGGGTGTT
GTGGTCGCGCATGTGTATGTCGTGGAGTTCCAGAAGAGGGGCCTCCGCCACGCGCACTTC
CTGTTGATGATGAATAGATAATATAAACTTGTGGTGCCGGAGCAGTATGACCGCATCATA
TCCAAAAATAAATTTGGTCTCATACTATCGTGGGCAAATGAAAGGTTTTTCAACCATTAA
ATACCGAGACACTAATTAGTACTAGATGAGTGGGCAAACGTGGATGGATTAGCCGACTTT
ACCCGCCAATATTAGACGCATCAATATTTATTTGGCTAAGAGCGGTGAGCATGTCCATTG
GTGTTACAAACCAAAGAATTGGTGTTGTTTCACGGAAACTCATGTAAAGTGTTGAGACAT
ACCAGATTCCTAAATCAGGATTGCTCAAACCCCACCAAAGTGTGCATGTGCAACGTCAAA
TTTAGTCAACATATGGCAAGATATGATAAGAAAGAAAGGAAAATACATGTAAAAATAATA
GTTGAATTTGTTCCACCAACTTTCACTTGTTCCACCAACTCGAAATTCCACTTCTGCATG
CTGTAATCCACACGCATTCTTGCAAATAAATAAAACTATGCGAACCAATGATATTCAAAG
TTTCCATTCAACAGATTTACCGGGATACTTGAGAGTCTGGTCCTGCAAAAGAGACCCTGT
GTCGAGGTGTGTACCTTGCATGTGTAAGTTCCTGTTATCTATCTGATGTGTAAGTTCCTA
CTAAGCTCATGCATGAGTGATGCAGCCTTTGTAGAGAGTTCTTTCCTAACAGCGAGGAGC
TTCTCGATTTCAGCACATAGATGCACAACCTCATCTCTCAAAGGCTCATTTGATCTAAGT
TCAACTTGAAGCTTCCTTCTCTTGCCAACGAGCTTGTTGATATAAGCTCCATTCTTGTCA
TTAATCTCTTCAATGATCATGTTCAGGTGACGTACTTGCTCCTTTATTTCTTGGTAACTC
CATCCGTTCCTCGGCTAAAGCATGACGGTCAGCCATAAGCCTGGAGAGTGCACACCCGTC
CTTGGTACCAGGCAGTCACTTTATCTTCTCTGCAGGATTTAGCATGTTTCACAACCCCGC
TTCAATGAAAATAAAAGAATACTAACAACATACAATGAACTTTCAAATAGTATATGAGGT
TATTCATGTTGATACATAATCATAATAAGATTTGCGCTGACATGGATGTTAGAGGAGGAG
ATGCTAAATTGGTAATCCATGAGATGCTAGCTCCAGGTATATGCATTATATTGCACTAGA
AATAGAGAGGGGAAATAGTGGATCTGCAGCCAACTCTTACATGCACTATATTGTATAGAT
TACCCCAAAAAGATCAAACTTAACTAAGTATCAAATATTAGATATTGTTCACTTAAATGC
TCAATTAAGAATGATTACCCTACTGGAATAATAAAGGGATTCAGACACATCTAGCAGAAC
ATATCTCTACCTAAAATTAAGGGAGTGACCTGGACTTTCAACCTGATTCGGGAGTTGACA
CTGGTGGGGCAGGAAGGGACGACTTGCTCACACGGGAATAGAATTTAGGGGCTAAATAGT
TTTAGATTTGATGAAATCATAGAAAAATGAGTGTCGTGAAGCATGTTGTCCTTGTTATCT
TGAAGCGCCTGCACTACAAAACAAATGTCAGTGCAGTGTTGTACTACTTCAGACCAAAAT
AAATCAAGGGGGCTATGATAATCGTGCTAGACTAATCATAATCCTTTAGTGTCAACAACA
TCAGTTCCTCTACATGCAACTGCCCAATCCCTCTATCTGTAGAACACACACAAGAACACA
AACGCACAACCCTGACGCCTTGCAAAGTCCCGCCACCGCTCACCTGGATCCGGATGTCGC
CGTCGTTCCGCGTCATCAGCCCGTCCGTCACCGCCTAGTCGAAACCTCACTCGATTAGAT
CGAGCGGGAGAGCCGCGTGCTGCCCCATACGCTTGTTGACCCACCTCAATGCATATCGAT
CACGAGGAGACCCCGATGTTTGACCCAGCCTGCCGCCTCCGCGTGCGCCTCCCGCCTCCC
GCCTCGCTGCCGCCGCCAAATGCAACGCCCGAGCAGAGCGCCGCCTCCCCTCCGCTTCCT
CCCCGACGATGACCAACACCATGTCACTCGCCGCCCATCCGCGCCCCACGCACACAGAGA
GGAGCGGGAGCCCCGCGCGCCTCGCCTCCGCTTCCTCCCCGCCGG