morexGenes - Barley RNA-seq Database

Contig contig_233538

Source Contig contig_233538

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_233538 (1631 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_233538

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_32982	1	1262 bp	MLOC_32982.1	Available	Available	LOC_Os04g43140.1, FRAME:+1, EVALUE:2e-36, 13104.m04275 protein DEAD-box ATP-dependent RNA helicase, putative, expressed

CDS Structure of MLOC_32982

Contig Sequence (1631 bp)

>contig_233538 1631 assembly3_WGSMorex_rbca.fasta
CCTTGTGGTCAAATTCCAAATTATCGAAAGGACTTAACTGAATTTACTGTTTAGTGAAAT
CAAAATGATGGAGACAGTAGCATTGTTCACATTTTGTCTCTTTTATGGAGTGAAATAGAT
TTAGTGAAATTCATCTTTAGCAGTAGCATTGTTCACATTATGTCGATTCGCATCAAGAAC
TGAATTTGTACAGTAGTAGAATTTCAGGGAACATCATATAAACACTCACATCTCCATGGA
AATTAGTCGCTGCAAGTTAATCACTTATGTAGCCCATACATTGCAATAGTCCATCTGAAT
CTTTACATGGTCTTTACAAACAACTTTGAATCAAAGACAAGCTGTATGCACTCCATTTGA
AATTTTGTGAAACATTAAAAAACATCTTATATATTTAATGCTTCTTGGATTTCTGGAAAT
ATTGGCAAAGTGTTCCTTCTCAAGCTCAACTGATTTTGGCCTGCCTATTTCTGCATCTCT
GTCTTCATGCTGGGTTTAAGTGTAATAGATAAAAATGCTTATCCAAATGTTGTTTAGATA
AAAACAAGGGAGATTAGTGTACTCATGCTACCAAACTAAACAGATTTTTGCTTTCTGCTA
CCAAACTGAACTAGGGAGGGGCAGTTTAAATCAAGATGCGACGCAGAAAAGAAAAGCACA
TATGAACAGAGTATATCTACTGTTGTAGCAATGCAGAAAGTTCAAATCAAGATGCAACAA
TGCTTCACTGTAAGAAGAAGCCAACAAAAAAAGGATAAAGCAACGACTATGAGTGACTAT
GAGTTTGCAGTCATGTTGTTCATACCGTCGGAAGCGACAAGATCCAGACTGGAACAAATG
CAGCAACGAAGATATTTGCTATAGATGAAACGTGTGCACTGCAGCTCTGTTGAGAGAGAT
GTAAGACTTTTTCTTTTGTAGAGATGAATTTAGTTGAGTGTTAACAGATTTGTCTGCAGG
GTTTGAATCCGCAACTAACAGAGTGAACATATTTTTCTCTGAATCACAGGATTTGAATGC
ACTCTTGCAACATCCCTTGCAGCCTAAGTCATTCTCACACCGCTATTTGGCTGGGGTTAG
TTTTCTGTCATGGAGTAAATGTTATGGATCGATTATGGTATCCTAACCTGACTAGAGTGT
CTATTATGTGTTCACTGACTTGAATCATCAATTTATTCAGGCGGGTATATCACCATTGCT
TCAAAAGCAACTAGAAGAGTTGTCCAAGAGGAATGTAAACAGTAATAGCAGTAATGACGA
TAATAAAGGGTCACGATTTGTTATTATTGGCCAGGATCGTGTGGAACCGTTGCAAGCCCT
TCAATATTCTGGACAAGAGGTTAGGTTTCTATAGACTATTTATGGTATTCATAACCAGAA
TCAAGTTTGCATCTTGTGTATGCAGTTGATACATTAGTTGCTTTTGTTTGTGTATATGTA
GTTCATATATTAATTGCTTCTGATTTTATTCCTGTCAGATTTGTGTGATCATGGACAAGC
AAAGGGAGAAGAGAAGACTTGCTGAGAATTGGAGGCGAAAGAAACACGAAGAGAAGAAAA
TTAAACTTCTATCATCTTTTTACTGTATTCACTTATTACCTGAACTCAGATGAATATTGG
ATGTAACATGT