Contig Data
morexGenes
Links



Map Locations of contig_232880 (6267 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_232880

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_32906 1 738 bp MLOC_32906.1 Available Available LOC_Os11g36510.1, FRAME:-1, EVALUE:1e-47, 13111.m03577 protein retrotransposon protein, putative, unclassified, expressed
MLOC_32905 1 731 bp MLOC_32905.1 Available Available None
MLOC_32908 1 530 bp AK250340.1 Available Available None
MLOC_32907 1 1473 bp MLOC_32907.1 Available Available None





CDS Structure of MLOC_32906






CDS Structure of MLOC_32905






CDS Structure of MLOC_32908






CDS Structure of MLOC_32907






Contig Sequence (6267 bp)

>contig_232880 6267 assembly3_WGSMorex_rbca.fasta
CGCCAGTTCACGTGGCAGTGCCCTCCCATCGCAGCCTCGCGCCCAGCCCAGAGGAAGCCA
CGCTGGATCTTCTCAAGTTGTTTCAGAGTCTTCTTCGGGGGTGCAAGGGCAAGCACCTGG
TGAGTTGGAATCGCGCCGAGGACAGATTTAACCAGTGCCAGCCGCCCTGCCTTGTTCATG
AGCCATGCTTTCCAGGACGGGAGGCGGCCTGCCACGGCGTCTACCAGTGGCTGCATCTGT
GCCGCTGAGGGTCGACGAGTGGAGAGCGGAATGCCCAGGTAGGTGATGGGCAGGCCCGCG
GACTGGCAGCCCAGCGCCTCCAGCAAGGCGTCGCCATCCGCACCGCCATGCAGGGTCGTG
GCCGAGCTCTTGCCGTAATTGACCCGCAGGCCCGATGCGGTCTCAAAAATGCCCAAGATG
CTCTTCACGGCGAGCACCTCCTCCATCTCAGCATGGCAAAACATCATCACGTCATCGGCA
TATAGAGAAATTGCCGGGATGTTGCGGCAGGGGTGCAGGCGCCGAAGGATGCCGGTCTGG
AGCGCCCTGTGCATGAGGCGGGCCAGCGCGTCGACCGCCAGGACGAGAGAATGTTTGATA
GCACAGCAAAAAGAAAGGAATCCTACAAAGAGGTTTCAATGAAAAAATTTCCTCCAAAAT
GTAGTGCAAATGGATCCTATGGAAAAAATCCTAAGGATCCCAATCCTACAAATCAAACGG
TCATCGCATGCAAAATTCCTAAGGGTCCGATGTACTCCCTCTGTTCCTAAATATNNNNNN
NNNNNNNNATTTCACTAGGAGACTACATACAAAGCAAAATGAGTGAATCTACACTCTTAA
GTATGTCTATATACATTTGTATGTAGTCCCCTAGTGAAACCTTTAAAAAGACTTNNNNNT
AGGAACGGAGGGAGTACATGATATAAATGGGGCATTCCATATGACAGAACCATGCTGTCT
GAATAATTCTTTATTCTTCAGCAAAAGTTGGGAGCGCATATGAGCAAGGTAATAAGACAT
TGGTACATTCACAGCACATACTTTGATGACACTTCTAATCACTAAAGATAATTGTGCCAG
CAAGTAATAACACAGTTTTGCATGTCGTGCAACCAAATATCGTCATTGAGAGCACCACTA
CGGCACTACATCCCTCTAGTTACTAAGCTCCCATGAAATAGAGGGCTCACAACGCTCCAG
CGTTTTACTTCGGAGTGGACCCCGTTTGTCAAGGAAAGGTTGTGGTGTGTATAATCCCAC
GCAACCGACGTACGTATCCGTCAAAGAAAAAATCTCACGCAACCGACGTATCTTGATTGG
TAAAACTCCCTTGCCCCTAGCTCTCGTAGAGTCGTGGTCTCTCCGCTTTTCCCCCAGCCA
CCGCCGCCCCTCTTCCCATTCGGTCGCGTCGCTGCCCTCCTCTTCCCCTGCCCCGCCTCA
CGCCGTGCCACCCGGCCTCCTCGGCAGCGCACCAACGCAGCAGTACGACCCCTCCGGTTG
CTTCTCTTTCCCCGTCACCTTAGTCCTCCTTTTTTCTTGGGCAGGAAACGACGCACCAGG
ACTGTGCTTACCTTCCCTTCCTGTACTTCTCCGTTGTTTTCCCAGCGCAGATTCGGACGC
ATCTTCTTGATGTGCAAGATAGCCCATGTATCCATGGCATCTTGATTACATAGCAGACAG
GCCTTGCCGACTGTCTGGTCACCTCCGACGTCGACCATGGGCTCACGATCCTAACCCAAC
TACACGTCTTGCCAACCATCTCGACCAAGAGGTAGTTGATGAAATTTTATTGATCTGATT
AAGGTGCCATATTTTTGGGGATTTAGTCGTGTGGAGCTCCTGCATGATGGTCTTGAGTTC
TGAACTGAACTTGGTTGGAGCTGAGAAGATCCGTCTGTGCTTAGAATTAATTTGTATTGC
AATAATTTGTGCTGGATCACTATTATGTTTGTCCAACGGGAGAGGCCGATTAGTTTAGTT
CAGGATTTGTGCCTTTTGTTTGTCAGGTATACGTGCCAATAATTTATATTGTTTAGTTGA
AATATGAGAATAGGGAGCAGCCAGAGGGAAGGCCATGTCTGAAGGAAATTATTGATTTTT
AAGTTTGCGAACGGATAATATGGAGGTGTACTCGAGTTGATTGATTCCTCCGATCGACAT
ACAGCGCTGCCGGCCTTGGGCATGTAGTTCTACCTACGGCATGAATTTGACCACTACAAG
GGAGAATCTCTACTAGAGCATGAACGGTGGCAGGAAGAGTCAGAACCACAAAAGGCAAAG
ATATAGACTAATGTTTCCATGTTTGTTTTCTAAATCGACATGACAAAGTGATGAGTATTT
CCTCTCTTCCAGGAGCTTCAGGAACTAATTCCAGAAAAATGAATATAGGTGGATTGGGAA
AAGAAAGACCCATGTGAACGTGGAGTATTTGAGGTCGAGCTCAAATGCACCTGCATGAAC
AATAAAATCAAAAAAGAAAATCAAACCATTTCAAAAAATTCTGAATTTTGTTTTGAGGAA
CTTTGACAAATGTTCTAAGTTCTGGAAAATTTTCACCATGAGATCACATTCGAGGAAAGC
GTTACAAAGAAACAAAATCGATGCTCTGAAAATGCTACTTTCGAAAGCATTTTGAAACAC
TGATTTTATTTTATTTTGCCACGCCTTACACGAATGTGATCTCATGATAAAAATTTGCAA
GCACTTAGAACATTTGTCAAAGTTCATCACAAAAAAAAAGAACTTTTTGAAGTGTTTTGA
ATTATTATTTTTTTACTGTTCATGCGGGTGCACTTGAGCACTTTCCAACCCATGTACTGA
TTTTTGGTACTGTTTTTCTCTTCCATGTTTCATTTGTTTGCTAGCAACCTTTGCGTCATT
CTTCCTCTTAACTGGAGATGTAGGATCATGTACGTGTATGCAATCCAAAGATGGATGGAT
TGCAAGAGATATTCCAAACTGGACAGATAGCTGATTCACCATATATAACATGAACACATT
CTATTTGCCATATCACTGTTACTGTGATGTATAAACATATAATTTGTCCATGCTCCTGTA
AGGATTTGTAATACTTCTCTGAAATTCATTCCAGATGAGATAGTAGTTGTGATTGTATAT
TTAGTTTACAATCATGGATATCTTTGGCATTCATTGTATAAAAATCAGATAGACAATATT
GGTAATTTGTTACTAGATTCATCAAACTGTGTGATGTTGGGTGGTGAATGCTAACATGTG
CAGATGAAGAAAGTGTATGATCTCTTAATGGATGAAGAAACTGTGTGATTGTATATTTAT
ATTCCACACTGTTTTTTGCTAAACTGTGGAAGAGTGCATTTCATGACATAGTTGGAAGAA
TATGCCCCCATGTTCTTGTATACATGAGCCATCTATTTCCAAGATTTCGTAGCTTCAAAC
ATGTTGGAATCCTTAGTTGGAAAAGATTAAGCATACTTTGTTAGTGAAATCGTGTTTTCA
ATTCGTGTGCTCTTCAATTATTAGTTGACGGGCAGTCTTTACCAATTAAATCCATAGCTG
AGGTTTGAAACTCAAAAGTACCTGATTCAACAAATTTAAAATTCGTCCAAAATATTTTTA
TTCTGCATTGTCCTAATCCTGAAGTTTATGCACATGATGCTCTGGATTTACGTATTACCT
CAGCCAACCAATTTGTGAAAAAGAAAACATATGCAGATAAAACAATGGGAAGATGGTTTC
ATGTGGTGTGGTGTATTGTTTTTGACTTTTTGTGATATGGGTGTTTGCTTGGCCAAATGT
GCACTTTATACTTTTGTAAAGAAAAGTAGTACAGGTGCCAAAATTCTTAGTGAATCTAAT
ATGTTGTAAACCCGATGAAGAAAAAATTGAAGGTTACCATCCCATGAGTTATTCAACTGG
ATACCGAGTCGATCAAACGGATAGAGCTAAACTTCATGGAGCGACAGAGCGTGAGAAAAC
AGACGATGAACGGGAATAGTTTTGCCCAACTCAAAAATTGATTATATATATACATCTAAT
AAAAGAAGGCCAAACGCAACGGTTCCCCGGCGCGGCAGAGCGCACCTGTTTCTCTAGTAT
ATAAGATGGCTAGAGCTGTTAACTACACTGGAAGCATAAATGCGGATAAAGCTGTTATGA
AGTCTGAACATTTGTGGAAGATCTTACCAAGCATTTCCTCCTTCATTTTTTCCTTTTTCT
CCGCTGCCAGTGGCTCAAGTCGGAACAATGATTTCTTAGCCTGTTGATTTGAAGGATCTA
GCTCAATGATTTTTTTCATGTCTGTGAAGAGGAACAATACCAAAAACTTAGCACTGGTGG
AACATGAAAAATGACATAAAAAATAATGTGAATGCACTGATCTCAAATTGATAATATAAG
CACATAATGAGGATAAAATCTGACCAGCAATAGCATCATCATAGTTTTCAAGCTTTTCAT
GTGCTTCTCCCCTCCGAAGCAAGGCTTTCAAATATGAAGGATTCAGCTCAAGCGCTTTGG
TGCACTCCTTAACTGTTTCATCATATTTCCCCTAGATCATATGAAGTCAGCACCGGAGTT
TGCGTGTAATAAGATATGACCAAAAGAAAAACCTTACTTAACAGAAAGCGCTCATACAAT
CCAAGTATATAAAAAGCAATTGAAATTAGACTATAGATCGAAGATTTCATCGACCACATA
CCACATTAACATGGCCTAGTCTACCAAGTTTAAACAACACAGTTCTTAGCAATGGGATAT
CCAAAACGGTGCCCGAGCACAGGTGAGCTTTTTATCCTAACTGGGGCAGTCGCATCCATG
GAAACGACACCCCTCCCCATGCGTTGCAGAGCCCGATCATCGCAGCCCACCGGACACCTC
GCCCTCTCAAGTTGGATAGAACGAGTGTCGGCTCGACCCCCATCCCATCTCGATGGAGAG
AGATGAGAGAAACGAGAAGATGTGACGAGAGAGAGAGAAGCTAAAGGCATTTACCGTCAT
CAGACCACCTGCCTCCGTATTCCCTATGTATATTGTTTCGTAACTCTTACACTAAATGAA
TGGATGCACATCCCTAGGTATCTGGACGGTCCACATAATAATAGCATATGTGCTTGGGAG
CCAAATCACTGCTCCCTGCTTTCTACCAAGATTACACAGAAAACAGATAAAAGTAACGAC
ATGCCTACAGTACATCAGGAATGGATAAAACGTATATAAAAGAAATAATTATAGCGATGG
TACCATACCATCTTCGTGCAATGATAACTATGAACGAACTACTGCATGTTCACATCAATA
AAAATGAGCAATGATGGATGGCAAGCAAATGTGGATAGTATCTGATGTCCTCCGAGTTGT
CGACCAACCAGAAAAATGTCTTACCAATTTCAAGAAACATACAGCACGATTTGAATGGCA
TGCAGAGGATATATCTTCAGAAGATTCCAGTTCAGCAGCAATTTGCAATGCAATTTCATA
TTTTGATAATGCATCTTCGTACTCTCCAGCTGCAAAATGTTTGTTTCCTTCTGCTTTTGC
ATCGTTTGCTTGGCTTCTAGCTTTCTGCACCGAGTTGAAGGGAAAGCTTTAATAGAGGAA
GGTAAACAGTGATGCTCTACAAAATACTCAGCCCAACATAGCATAAAAACAGCATAGTAA
GACATGAAATTCCGTCAACAATTTACAAAAGCCTATTTACAGGCAGATAGCAGCAGCAGA
CCAATAATTTATCAAAGCATGAAATTTGGCTAGTCATTGCATCATATATTACAGACCAGA
ACAGTTAATACTATCCCACGAAAGAAATAGTATGGAAATAAGCTTGGAAGGTAAAATTTC
AGAAACAAGTTTTGCCTAAAATCTAGCACTGCCACTTCAGCAAACGTCAGTTTCGTACAT
CACATTCATATGCTAGGGTGTATTGTATTTAATTCAGCATTTCTTACTTCAGTTTTTCAT
AGGTAGAATGCTAGTCTGCTGGACAGTTGTCGATTATTTGCCTTATAGATCCGAGGAATG
AGAACACCAAATCATGAAACTAACCTATGGTGCTACCTGCATACTAATACTCAAACACGA
TAGTTGGTTCAGGACAATATCTTCTAGTAAGGCAACATATGCACTTATTTCATAAGAAAA
TCTGAAGAGTCCAACAAATTAGAGAGACTAAATTCATTAGCTGACTGAGTGGAGCGCAAT
GGATCATCACTTATCATGTAGTAACTACCGATTCTTGCATCCTCCTCACTTATTAGTACT
TGTATAAAAGCTGACCCGCGGGGGGGG