Contig Data
morexGenes
Links



Map Locations of contig_227778 (2175 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_227778

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_32345 1 352 bp AK366711 Not available Available None
MLOC_32346 1 1049 bp MLOC_32346.1 Available Available LOC_Os12g23770.1, FRAME:-2, EVALUE:2e-37, 13112.m02415 protein retrotransposon protein, putative, LINE subclass





CDS Structure of MLOC_32345






CDS Structure of MLOC_32346






Contig Sequence (2175 bp)

>contig_227778 2175 assembly3_WGSMorex_rbca.fasta
TAAATAAAGTGGTGAGTACGGAGCATAGAAGTGTTCAGTGTTCAAGAAAACTACGGGATG
GCAAAGTGTACGGAATGTCTGATGGTGCTTCATTGAAGAGGGGGTACTCCAAGAGGAAGG
CAATGCAGCACAAAGCATTGAGTATGAAGGTGATACCAAATGAAAAGACAGCACCACCTG
CTGGTCCGACTAGTTGCAAAAAGGTAGGTTGAATTTCGCACCTTGGAAGAAAACACAATG
AGAAACAGTTAACTTAATAATGAAAATCAATTACGACAGGGGTCCAGTTTTGACCCCATG
ATACATGCTACATCCTGTGATTAATCCTCTTCTAAACAAACCATCATGTAGCATTCTAAT
AATATTTGTTGATGTATAAATGCATAGCCTATCTTTCCCCATCAGCTTGAGCTTTTGGGT
GAACTGGTTGGTGCATGCAGTTCAATATGGTATCCGAGCCAAAAGGTCTTGAGTTCAAGA
CCCTGCCAACGCAGTATTAAAATAAAAAGATTAAGCGGCCTACATTGATCCCATGTCTAA
GGACTAAGGGGCTGTTTGGTTTGAGACTAAGTTTGCCAAAGGTTGCCACACCTAAGGTTA
GGCAAGTTTGACCAACTTAGGTGGGTGTTTGGTTCAAGCCACACCTTAGGCAAGTCACAC
TAGGGTCCCACATCAAATACACTCGAAAAGTGTGGCAAGGTTCCCTTTAGGCTTACCAAC
TTTCTTTTTCTCGAAAACGTAAGAGATTTTGCATTTCATTGTATTGAAAAGAGAGAGAGT
TGTTACAATCCTCCTAGGAGGCTATTACAGGTTCCGGAACATAAAATTCAGTGAACATCC
CATGTTGGGGGGTGATGGCTCCTAGAGCACCCGCGCATGCCTAGTGAGTGGCCTCGTCTT
TAATCTTCGTGAGCATGGTGTCCACCGATGGTTGTCCTCTATTGAAAACGCAGTCGTTGC
GCTGTTTCCACAACATCCATGGGACGAGGAGGGTCATGGTGCCCAGGCCTTTGCGCATGG
GCGATGGGACGTATTGCCTTGCAGATAGCCACCAGTCGAGTAGTGAGGGCTCGCTATCTG
GTGGGGCACACGGGATCCGCAGCCAGTGCAGTGCCGCATGCCAGATCTGTTAGGTAAAAG
GGCAGGCTAGAATGAGGTGGTGCATGGTCTCAGGTGCCTGGTCGCAGAGGGGGCATCACG
CAGGGTGTTGCAGCCCTCGGCGGGCAAGCCGGTCTGCGGTCCAACATCGGTCGAGGTGGG
CAAGCCAGTGGAAGAAGCGGACACGCCCAGTTCTTCCATGTGAGCTTCCAGGCGGGGCAA
GTAGTGGAGCCGGCGAAGGTGGCATTGTAAGCAGATTTGGCGGAGTAGGCGCTGTTTGTG
CTCCATCTCCATATGAGGCGATCTGGCTCCGGAGAGAGGGTTGTGCCGTCGATCATGTGC
CAAAGCTGGAGATATTGCCCGATCTCGTGGAGGCCTACCGTGCCTTGGATGTCATGTGCC
CAGCGGTTGGCCTGTAGCCCCTCCGCGACCGTCCTGATCTTGCGCCGGTGCTTTGGGATG
CACGCGTATAGGAGCGGGGCGATCTCACGGATGGAGCGTCCGTCGATCCATCGATCCTCC
CAGAAAAGGGCTTCCCTACCGTTGCCTTGTGGCTCCCATTTTGAAGAACTAACCTTAGGC
AAGTAGGGCAACATTGTGTGGCGAAGTGTGCCATTGCTAGCTGTAGAACCAAACAGCCCT
TTAATAAGACTAGACGTGAGGGGGAGTATTGAAATATATTGCCCGCCTCTCTCCATCAGT
TCAGACTGATGGGTGAACCGGTTAGGTGCATAAACTTGCAACCAAGAGGTTCAGGGTTCA
AAACCCAGTAAACGCAATAAATAATTGCGGCATGCCCCTGCTTCTGTTGCCCACGTCATA
AACTCCAAAGGAGCATAGACGTTTCGTACTTTTGGAGCAACTGGCTGGAGCATGAATTGT
TTCTAGATATGAATTGTTCCGTCATATTTCACCTTTGCTCCCATTGATTACAATGCTGCC
ACACTATAGTTGAGTGGCATGCTCGCTGTAGAACTCTGAACATTTCACTTACAACCTCTA
ACTATCATATGATGATTTGATGGTGATAGTCGTGTAATTATGCCCCTTTTTCCTTTGATG
TTCTCTAGCAATCAT