| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
No map location |
Predicted Genes from contig_225328
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_32112 |
1 |
556 bp |
MLOC_32112.1 |
Available |
Available |
None |
| MLOC_32113 |
1 |
564 bp |
MLOC_32113.1 |
Available |
Available |
LOC_Os06g14910.1, FRAME:-1, EVALUE:6e-14, 13106.m01652 protein retrotransposon protein, putative, unclassified |
| MLOC_32111 |
2 |
1984 bp |
MLOC_32111.1 |
Available |
Available |
LOC_Os07g48640.2, FRAME:+2, EVALUE:5e-141, 13107.m05213 protein short-chain dehydrogenase/reductase, putative, expressed |
CDS Structure of MLOC_32112
CDS Structure of MLOC_32113
CDS Structure of MLOC_32111
Contig Sequence (4043 bp)
>contig_225328 4043 assembly3_WGSMorex_rbca.fasta
ATCGCGTAGGCACGCCTGTACAGCTGCGTACGCACGTTCAAAAGCCAACAGCCCCTCCCC
TGTCCCGCGCCGTGGGTCCCGCCACGCAGCCCAGCGCGGGCGCAGATCGTCGGCACCGGC
GCCGGCGAGGCGAACCCTCCGAGGCAACTCGTAAAATACTCCATGGTCTTTTACTAACCA
GCAACCACCACGGCCTAGGGTTAATCTGGAGCCTCACCCGGTCACCAACCCCCACTCCCA
CCGCAGCATCTTCATTCCTCTTCCCTCGCCTCGCCGTCTCCGACCCAGCCGTCCTAGCCG
CCCACCGCAACTCCGCAAGCCATGGAGAAGCCGTCGCACATAGCCACCGCCGACGGGAAG
CAGCCATCGCGCAGGTACCATCTCGCTCCCTCACCTACGGTCACCTCTGTCTGCGACCTG
CGGGCTCAATGATTTGAAGCGTACTGTAGATAGTTCTTTAGCACACAGGCCCATTCTTCT
GCTGGTGCAATCTTACATGGAAAATTGAAGTCGAGCCTAATTACTTGCTCGTTGTTACTT
ATAGAATGGATGCTACACATGCCAATAATTAGTTTCTACCACTAGTGTTTGCCGGATCAT
CCACTCCAAAAACTAAATTAAATGGACAAGATGCTAGTGATATTTTGTTTCTGTCTGCTT
TTCATCAGGCTTGCGGTGGTCACTGGTGGAAACAAGGGAGTCGGCCTGGAGGTGTGCCGG
CAGCTTGCTGTCCAAGGTGTAACGGTCATTCTCACGGCCAGGGACGAGAAGAGAGGGAAG
GATGCCGTTGAGTCTATTCGCCGTGAATCCAACTTCTCCAACGTGGTCTTCCACCAGCTC
GACGTCCGGGATGACAGCAGCGTCGCCGCCCTAGCGCGACACATCGAGAGCAGATACGGA
GACCTTGACATCTTGGTAAAGTGAGGTCGTTTTTGTTAGATCAGCACTTATGCATCATTT
TGGGGAACATGTTATGTAAATGAGGATGGATTGGGTAACGCATACAGGTTAACAATGCAG
CAGTTGTGGGGGTTGCAGCAGACGAGGAAGGCCTCAAAGCTCTGAACCTTGATGCAGAGA
CATGGGTACTGCTTTTCTCTGAATCTTTTTTAAAAAAAAAAAATAGCTGATCACGCTTGC
CACGCGGTATTTTTCTTTTGATCTGAACCTTTTGCAACTTAGCATATTTGTATGTCATCT
GTAGAACTACAATTTCATCTGTAACATGCATACTTGGTACACCAATGTTTAGTGTTCAGT
TTTAAATTCTTTCATGATTCAGACATCTGGCAGAGCAACCATTCTGCTCAAAGACGTGTT
CAGGAATACCTATGAGGTGACACGGGACTGTCTCGACACCAATTACTATGGATGCAAACG
GGTAACAGAAGCCCTCCTTCCTCTACTGAAACTATCCACATCCGGAGCAAGGATCGTTAA
CGCCTCCTCCCTTGCTTCAGAGCTAAAGGTATGCCATCAGTTGAATTTCGTTCTCCAAGA
ACCTCCAAAACCTCGAGAACCAAAAAGGAGATGTAGTCTGCCCGATACATAGTCGGTTAG
TCTCACTCACGTGTTCAACTTTGGCGCTGGCCAGAGAATGCCGAACGAGAAGCTACGGAA
CGACCTGAGCAACATCGACATCTGGGACGAGACGCGGATCGAGGCGCTACTGAACACCTT
CATGAATGACCTGAAGCAGGGACAGCTGGAGGAGGCAGGGTGGCCGGCGATGCTGCCTGC
TTACAGCGTGTCGAAGATGGTGATCAACCTCTACACGAGGATTCTGGCGAGGCGTCACCC
AGAGATGCGTGTCAACTGCGTGCGCCCAGGCTTCGTCAGGACCGACATCAACTGGAACTT
GGGGACCCTGACGCCGGAACAGGGCGCGAGGGGGCCGGTCATGCTGGCCCTGCTCCCTCA
GGATGGGCCGACCGGGTGCTACTTCGATCAGACGGAGATGGTGAATGTCTGGTAATGGCT
GTTTACTGGATTGTCAGGAACCACGTTATGGTAAGTTCATCTTCCTGTGTCATGCCTGAG
GCCATTGGCCAAGACAAGTTTCTTCTGTTCTTGCATTTTAGACATGAATAAAGAGTTAAG
GACGAGCTATGGTACTGCATAGTACAGTACTCAAAAAACGTCTTACATTATAGGACAGAG
GGAGTAGTTAGGTACCACTACCCCCCAAAAAAGAGGAGCTGATTGAATCTCAAAATAATT
CACAGTAACAGAGTCTATTAGAAGGTAATCAGTTTGAATCAAGAACATAAACAGAGTGTG
TTCCTTTATTATGATGGCCCTACTACGTTGCTGAGCCACACACTGCACAAACATTTGTGT
TAAGATAGAAAGTACAGTAGTAGAAACTGCACATCCAAACCACTTTGCTACTAATAGCCC
AGTAAACTTGAGAGGACAATGCCACTCAATCAGTAGTTAATTAAACAAATCAAACGTCTA
GCACTGTCACACCGAGAAAAGGCGCTGAGAATAGCAAATTCAATTGGTGATCAGTTTGAC
CTCACCTGATCTCATTTATATCGCTACATTTACCCAAAAAGACTTCGTGCCCCGCTTTAT
AGATAAAAAGCATGAACAATACAACCAATCCGAACAAACGGAAGTCCATAGCAAGAAAAA
ACAAGGGAAACAAGAGGAGAGAAAGAGGTTCACGCTGCGGGCACAGCAACAACAAGCCTG
AACATAATAGAAGATACATCCTCAAGGAGGATAGGTAATCATCAGGAGATGAGCCGCCAG
TTCTTCATATCTCCTCGTCAGTTGGTCCACCACCGCCCTATCCCATCGCTTGGATAAGGG
CCTCCACAACTGCAAGAATCCACACAATTTATATGTATCATCAGTGGCCCGGCTAGGAAA
TATGTGCTCAATCACTAGCTTATTCGTAACACACCAAAGCGACCATGCCAAGGCATCAAA
ATTGACCCATGTCAATCTGCAAACCTGGCCCGAGCCTCCAGCAAGGAGCTGGTAGAACTC
GGGGAAGTTAGTGGGGCGCCATCCATTGCCCCAAACCTCCAGAACACAACTCCAGAAAAA
TTGTGCAGACACACAGTAGAAGATAATGTGGTTGAGATCTTCCTCTACGTCACATAGAGG
ACAGGTGCCTGTCCCTGGACCATTTCACTTTAAGACTTGATCTCCGGACGGAAGCCTACC
TCTGACCAGCTGCCAGAGGAAGATCTTGATCTTAGGCGAAAGCTTAGTCTTCCAGATCTG
GGACAGTTCGTCTGGTCCCTGACCTGGCGCCAATTGGTCATGTAGGGATTTCGAAGAGAA
CCGCCCCGAAGGGTCAAGGCACCAAGAAGTGGTATCCGCCCGGTCCTCCAGCGAGGTAGA
CACAATCACCGCCGAGAGAGAGAGCCAGTCATCCGATTCATCAGGCCCAAGAGTTGTATG
AAAGGTTAGTTCTGCAAAATCATGAACTCAGCGCTGAAAATTAGATGGGCTTGGAGGTTG
TGTACATCGTCTGAAGATCGAGCCTGCAACTTACTTGCAACTCTTCTTGATGGTCGAGGA
CGACATATGCTCAATGCTGCAAAACCTTCTTTTGGATGGACAGATGGCTCAGCGGGACCT
CGGTTGAAGAAATCGCTGCTGACGTCTTCCACTCTGTCTGTCCCATTAGCCAAGCAAAGA
GAAGAGTTGCTGATGCTCTGGTTAATAACAGTTGGGTCAAGGATATTAGGAAACAAATTA
ATTTTAGGGTTATCATGCAAATCCTTGGGCCGTGGGAAATATTATCTGACATCGAACTCA
GTCCCAACAGGAGAGATACTTGGAAGTGGTTTTGGGAGCCTGAAAGGTGTTTTCTCCGCA
AGATCAGTTTATAAGTCCTTTTTCAGCTGCAATGTGTTAATCTCCAAGATGTCGCCCTTC
CCACGAGGACTCCCCTGATCAACCGGTGGAACTTAGCTATGGAGGGGAAGAGGCCGAACT
CTCTGGTAACACATCATTGTTAGATTGATCTCTTTTCCAATGGGCCCAACGGCCCATTGG
ACCTTGACTCACGCCCTGATCGG
