morexGenes - Barley RNA-seq Database

Contig contig_224050

Source Contig contig_224050

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_224050 (1695 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_224050

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_31981	1	279 bp	MLOC_31981.1	Available	Available	LOC_Os05g06130.1, FRAME:-2, EVALUE:1e-14, 13105.m00652 protein transcription factor X1, putative, expressed

CDS Structure of MLOC_31981

Contig Sequence (1695 bp)

>contig_224050 1695 assembly3_WGSMorex_rbca.fasta
CTAAATATATGAGCAAACATAGAAAGGCGTCCTGCTTAGGGTCGGTTCTAGAGGAGCCGT
AGTCTCTTGCTCGCTTTGACTAGCTTGATAGCATGCTGGACTGCTTCCTTAGATTTTGCT
TTCCTCCCTTCCCTCTTGTTCCATAGCTCTGGGAAAGGGACCCTGCTGCCACTGCCATTC
AGCTCGATCAGCGCCGTCACCACTGCAGCATATGCTTCATCGCCGTACTCCTCTTTCAGT
TCCTTGAGCTTCATGTCATCCTCCCTGATCACTTCCTACACAAGAATATGCACCAGGTAC
AGCATCAGTGATCCTAATAAATATTTATATGAAAGAAGATGGAGAAAGCTCCGAAATTCA
GAAGTAAACCAGGTGAGATAATTGAAGGTGCAATGAGAAAATGGTGTTGCACTTGTCAAT
TGCACAAGTCGATCTCTAAATATGCAATGACAAGTATTTAGGGATGCAAGCGAACAATCC
ATGATGCCCGCGAAGGTGAAAATAAGCTAATCACTTTTGCTTTAAAAGCCAAGCTAATAC
AAAAACCATCAATGCAGACACTTCTGCTTTAAAAGCCGAGCTAATACAAAAACCATCAAT
GCGGACATTCGCAGACGCATCCACCTGCGTCCCTACAAGGATTGCTAAGCGGATTGGGAT
CCTCATATGTTCGGTCCAGAGCACAGACTAGAGTCTGGTCGTATTATCATGCTACTCAGA
ATTCAGTATGTTTGGTTGCAAATTGCAGTCCTTTCCTGATGCAATCTATGTTGTCAACGT
TGACCTTGCATCACAAACTCAAATTCCTTATCAGCAAGACTTGCGGAAGAAATATCATGG
AGGGGCGCACACCGTGATTGGGTATAGATAGGAAGACACTCTGCTGGCCATTTAGTGTGC
TAGAAACAGACAATTCCAGGTTATTAAAAGCTGATCCATATATAACCAATCGACAATTAT
GGTGCACGCATGATGTATGATTTATTATTTTGTTCTAATCAAATAAACTAAAGCATCATA
TACACAATTCCAGCTGTTTCAAAGCTGATCCATTTGTAATTCTTGTATACAAGAGTTTGT
CCAGTTATAATGGTCCAATGAATCAAAGATGAAAAATGCTCCAAATAGTATATCAGTAAA
ACAATAACATCAAGTGACTACAGATCAGTCATAATATAAGGTCCACCATACAGAGTCCTA
TGTTTTTCCATTTTCCGTGACTTCCTATCCTATTTCTCCTTTTTCTTAGCAGATATAAAA
TAACCATCAACAATTTCAGTTTTTCATGTAAAAGATTTTAGGGGAGGAGAACAATCTGTG
CACAGTTTAGGCATTCAATGTGGCCATTATGGGTTTGAAAATCTTGAAAGAAAATTTTAA
TTGTGGGTTTAACAAGGTGCCAGAATTTCCAAGAAAATCTCTTGTTGCCATACTTATGTC
AGGGCTTACCCCTTTGCTTGTTGACTCGGGTGAAGCAACTCATGCGGATAACAAGAACAC
CTTCTCTTTCGAGTTAGCATGGTTTGAGAGAGAAGGCTTCGTGGACCTCATAGCTAGAGA
ATGGGCTAGGGCCACAGGGGGAAGATCAAATGTCGATAATGGCAAAATAAAATTAGACAC
CTGAGGCAATTCCTACGGGGCTGGGCACAACATGAGAGCGGCAGATATAAGAAGGAGAAA
GAAAGACTTCTCAAT