Contig Data
morexGenes
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Map Locations of contig_223946 (6832 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_223946

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_31969 1 1705 bp MLOC_31969.1 Available Available LOC_Os01g67040.2, FRAME:+2, EVALUE:3e-152, 13101.m07269 protein OsRhmbd5 - Putative Rhomboid homologue, expressed
MLOC_31971 5 897 bp AK248906.1 Not available Available None
MLOC_31970 1 433 bp MLOC_31970.1 Available Available None





CDS Structure of MLOC_31969






CDS Structure of MLOC_31971






CDS Structure of MLOC_31970






Contig Sequence (6832 bp)

>contig_223946 6832 assembly3_WGSMorex_rbca.fasta
TCTTTGATCAACGAACTAGTCCAGTAAAGGCTCACTAGGGACACAGTGTTGNNNNNNTAT
CCACACATGTACTTGAGTTTTCAATCAATACAATTATAGAATGGATAATAAACAATTATC
ATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCTCTAGGGCATATTTTCAAGA
GTTCTAATCTTCAATATGGCATTCCACCTCATTGATCAATGGCATGGTCTTCCCATCCTT
TTTCTACACCCCCCTCAAGTCCAAACCAACCTACTAAGACCATCTCCATATATATATTAT
GTATTCTTCACCCCTCCTATTTTAACACACACACACACACACACACACACACACACATAT
AGGGTCGCGCTATTTGTCACCCTGGGTGAGGATTCCTCGCCCCGATCCAATCCTACTTGA
AAACATAAGAAATGTACACACGTGAGGTAATATTACACTATGATGAGTTGGCCTAGCACC
GTACAAAAGAAAGTGAAGTAATTTTACAACATGCATGCCGTAAAATTACATTCTGCATGC
AATGAAAATGTGGCGTATCAATATCTCACTAAAAGATGTTGTCATAATTTTACAATAGAA
GTGAGGTAATTTTACAAGAGTAATCAAGGTAATTTTACAACATGCATGCTAGAAAGTTAC
ATTGTGTGTTTTGATATTTCTTTTGTCTCAGTCGAATGGCCAGGGTGAGGAATAAACTAT
TCTTCACCCTAGGTGTATAATAGAGTGTCTCTCTCTCTCTCTCTCTCTNNNNNNNNNNNN
NTATATATATATATATATATAATAGAGAGAGAGAGAGAGAGAGACTACAAGTAGTGGTCC
ATCCACGTGAGGGGCACGTGCGACTTGAACTTGGGACGTTGGGTGATCGACGATGGTGAG
AGGACAGAAGGCTGCTCCGGCCAGCCTCAAGTACCCTACCAGGAAGATTTTTAAGTCGAT
GGAGGAGACACACTCGGTTAAGGGTAAGATTCCTTGTCGAAGAGGGAGAGCCAATCAAGC
AACTACCGGCGAGCTTCTCCGAACCCTGCACGAATGAGCCATTGTTGCCCCTCGCGGGCA
TGGAGGAGAGAGGATAGCGATTGAATGAAGCGAAGTAGATCAGATCGAGCGGAGGAAAAA
TGATGTGCCCTTTAATTGTGTTGTTGAAGCGCGATTGACTAACTGTTGTTTATGAGTTCC
AATATCCATTGGAGAAAACAAACTAGTGTTATGGAAGTTACGTGATTGGTTCATAATAAG
GATGGTTCTACTTAGTGCATCTTGGTTGTATATGTACCTCAAGGGGATGAGCTCGAATCT
TAATCCACAAAAATTTAAGGTTGAGGCGAGCCACTTGCCACTGACCTTTGTATGGTGCTC
GGGGAGTTTAATATGATCCCTCATGCCCATGGAGAACAACAATAATCTTAACACGAGCAT
CATGAGAAGTTCCACCACCACCAGCCTAAATAGGCGAACGTCAAACACCCAATGTTCACA
CCCACCACATAGGCCATCAATCTAACCCATTCGATCAAGCACACATCCTCCTAGCCCCCA
ATCCACAAACTCGCAGCAGCGTGAATCTCCCCCGAATAATACAGGAACAACAATAGAAAA
GAACCACATGAAGCACAAACCTCCAAGGACGCACCCGAGCCACCACGTGCTACCCCCCTC
GTTACCCACACAACCAAGAGGGAAGACACCACCACCGTCATGATGCCCTTCGGAGAGCCA
ATCATGTGGACCATAGTCCAGAGCCGCCGCCCACGCATCCAAGTTTGAAAGATCACCCAT
AGCCCACATCACGATGTACCAACCATGATAGAAGGATATAAAGGCCGCTCCTTTCACTCC
TAGCCCGACATCAGGCACGAAGTTTGGGATGGTGCCACCACTGTAGGGGGGCCACACCTG
TATCCCAAAAAGTCCCGGTGGAGTGGGGGGCACAATCTCGTGATTTTTTACGACCGTCGT
TGAGCACCCTCACACGATGCCATGTTCCTCAACATTGCGTTGCTCGTCAATGAAGAGATG
TCCCGACCATCACCATCGCCCCATCGCACCCGCAAACGGAGGGACCTCACCACCCCCTGG
CACCACCGGATCGAGCCCAATCTCATCTATCCGAAGCCTCAACTCCGACTCCCCTCATAC
CCCGAACAAATGCACCCAAGCATGAGCCCCCGATCACCGCTATGCCATCGACATAGACCA
AGGAAAAGATAAGACCGTGCCCCTCCGTGTTGGCTGGGCATGTTCATAAACATGTCGCCG
CGGGGCCGTGTCGTGCGAGGCATGTTTAAGGAAGGCCGGGCCGTGCCGGGCAGATGGCTA
GGTCCGGGGGAGATGCTGCTAATTTTGCATTTTAGTCCTGTATATCAGCTTTCTCGACAA
CAAAAAAAAAGAGTCATGTATCGGTTGTGAAACAACATTGTTCTTTGTAAAGCGTCGCAA
AGAAAACAAAAACAAAATTCCCTCGAGTCGAACTCGAGCAGTCTAGGGCATCTCCCCCCA
GAAGCCGCTCGAATCCCCTCCCCAGAATCCCAAGGTCAGAGCCACTGATCTATTGCCAAA
CCCCTCAATCATCTCAATTCGGGCCGCGGAACCCTAGATATCCGGCAGCCATTGATCCCC
TCTTCGACCAGCGAGTACCCAATCCGTCCCCTTTTGGAGGGGAGGCGGTGCTAGAGATCC
TCCGCTCCCGATCCACAAATTCCAGCAGACAGAGCATCGTCGATCTTGGTCAACCGATCC
ATCCAGGGCCACGATCTCGTACTTATATACTCCGGCGACATGGGGAAGCCTCTAATCTAC
GAGATGCTGGAGAAGCCGGCGAGCAGCGGCGTGATAGCCCTCTGCTCCCTCATCTGGTTC
CTCATCCAGAAGAAGGGCATCGGGTACGCGGACGTCGGGCTGAGCTACGAGGCGGCCGTG
GAAGGGGGGCAGCACTGGCGGCTCATCACCGCCGCCTTCTCGCACGTCAGCGTGGTGCAT
CTGGTGTTCAACATGAGCGCGCTGTGGAGCCTGGGCGCCGTCGAGCAGCTGGGGCCGCAG
GCCGGGCTCGGCGTCCAGTACTACCTCCACTACACGCTCGTGCTGGTGGTGCTGTCCGGG
CTGCTCGTGCTCGGGATCTACCATGTCATGATCCGGAGGTTCAAGGTGGACTACTTCAGG
AGGGTGACCGCCGTCGGCTACTCGTGCGTCGTGTTTGGGTGGATGACAATTCTGGCCGCC
AAGCAGCCGTCGTCCAAGCTCAACCTCTTTGGGGTCCTCTCGCTGCCCATCAGCTTCGCG
CCGTTCGAGTCGCTGATATTCACATCCATCATGGTTCCCCAGGCCAGCTTCGTTGGCCAT
TTGTCTGGGATTATTGTTGGTTACTCCATTGCCTGGGGTTTGATTCATGGGATGAATAAC
TACTGGGCGGTAACAATGCTCGGGTGGATTGTGCTTGTGTTTGTGTTGAGCTTGAAGCGC
ACAGGTTCTTTGGAAATGAGATTTATCGAGATTGAGCCAGTTACGGATCCCTCACTGCCG
TCTCTGGGTGCGGTCGCCTCGAGAAATGGTAGAACTCTGCAAATGGACATGCTGCCCGGA
AGAGCAGTCGCAGATTTTGTATGACCTCCAGTGTGGAAGAGCTGCTCAATGAAATGTTTG
ATAGGTCTTGTTTCACTTTGTAAAATTGTATTAATTGACACAATGCTATACTTTCAGTTC
TGGGAATCTGGTGTTATGCGCTTCATTGGTCATCTCAGATGTGAAGGGAGTTGTTTTATC
TTTACTTCCAGATGAAAATGTTCATTTCGAACAGAAAAGGATCCTTTTATGAAGGATAGC
ATGTAAAGGAATGAGAAGCATGTAGAAAAGAACAACTGAATTTGTGCTGTGCATATCAGA
TTGTTTCCATTCTAATACGTAGACTCTATTCTAATATGTAGACTCAAGCTATAAACTAAG
ATATTGTTACCGATCCCTTGCTGCCGTCTGTGTGTGTGTGTGTTGGTGTGGTTGCCTCCA
GAAATGGTAGAGCTCTGCAAATGGACATGCTGTCCGGAAGAGGAGTTGCAGGTTTTGTAT
GACCTGCACTGTGGAAGAGCTGCTCACTGAAATGTTTGATAGGTCTTGTTTCAGTTTGTA
AAATTGCATCGCGTTGACACAACCCTATGCTTCCAGTTTTGAGAATCTGGTGTTATGGTT
TTCTTTCATAATCTCAGATGTGAAAGGAGTTATTTTATCTCAACTTACAGATGCATATTC
ATTTTGAACAGAAATGAATCCTTTTTGTGAAGTACTCCCTCCACCCATAATATAAGAGTG
TTGTTGACACTAAGATGGAAGGAGTATAACATGTAAAGGAAAGAGAAACATGTACAAAAA
GGAACAACTGAATTTGTGCTGTACTACATGTCTGATTGTTCCTATCCTGATGTGTAGATT
CAAGCTTATAAACCAAGATGTTGCTTTTCATATGTATCTTATGATGAAGAACTGATATGC
TCCATTATATTTGTTTCAAGGCGTGGATAGCCCATTGTTGCCAGTACAGCCATACAACAG
CCTTGTTCTGCCAGCCATTGGCGTGTCACCTTACCATTTTGCATCAGTGTGTTTAGGCGA
ATCTGATGCTATTCTGGCATATCAATCAATTAATCAAGGAAGTTCTAAGCATTTTCTACA
TTCTACATTTACAGACCGGTTATAGGTAGTGCATCAATTTATTGATTTAATGCAGGAAAC
AGAAGCTAATGCATTGTTCTTGTAGATCTGTGCTTTGTTTTCATACATGAAAGGTTAAAT
CCCTAAGCGTTTGTGTATGCCGATTAAGTAAGCAAAGTAAAATAATTGCTGGGAAGCAAA
GTAAGAACTTATATGCATATTGAATGCTCTTGAGCAACAATAGTCATTTGAATTATGCTT
GAAAATCTCTTTATTTGTATTAGCAACAGCTGTTTACAAAAGGAAGCACATCGCTGACCA
TGTACATTACACTCACAACATCAGATTTCAGGGCCAAGGCCAAGTTTTTGACTTTTGAGG
ATAGGTGGAATTGTCTGCCCTGCTGTCACATAGGAATGATCTTCGTGGTCAATTCAATCA
GTTTCCCTCACACGAGGCAAGGAACACTTCAATTATTGGCAGCAACTATAACGCAATGTT
CATGTCAAATCCCAGCTTCTCCTTCGAATAATGGAAGATTTTGGGGCCTCAAAGCTCATC
CTGAACATGACAACAGAATGTGTTGTTAGTAACCTGCTGTTATCCAATGCAGCAGTTATA
AATATTAAATGAAAGTATGAAGGTGCTTCACAACTTACATGGTAGTCATCCCAGTGATCC
CTGTTGCGCTGAAACAAAAGAACAAAAGGATGTCAGTAAATCATTCATTCATTTGTATAC
GATGTCTTACACAGTCACAGTGTCACACAGTATCATACATACAAGGTTATGATACTACAA
CACAAGGCAGCACACCATGGCCCTCCAAGAATACCAGTATTAGAACATAAGCAATTATGC
TTGTCTATCATATCAGCAATGTCTTAAGGTCCTGGGTTATCTAATATGTTGATATGTTCC
ATGAATCAACAAGTGTGCCGAGGGAATCGGCGAACAAGGCTTCTAAGAGATTTTTCCCAT
GCTTGACACTCCGTAGTCAGTTGTTGATACTTCCAAGAGCTCTAGAATGACTCGAGGAAG
AAAGCAAACGGTATGTGAGCTTACTCTTTTGTATCTGTCCTTGTAGTGGTCCCTGCCACG
GTGTCGATCACCCCTCTCTCTCCTCCGTCGCTCTCCTTCCTCCCTTGCTTGTTGAGCTTC
CTGTACACAAGCAGTTACGTTTAGCTTCTTTCACAACGACAGTTATTCATTTGTGGTTCT
GCCTCAAGGACCAAAAAAAAAAGCAAGTAACAATTGCTAATTGAAGATTTTAACCTTATC
TTCTCTAGCTTTCCTCTCCTTTTCAGCTTCTTCAAAAGCCTCCTTTTCAGCCTATAATAT
ACAAAAAAGTAAGACACTGCTTACCGGATATCAGCAGCAGGTTCAGTAAACATGTGCAGT
TACCTCCTTATTTGCACCCCACGTTTCATCGGCAACCTGTTTTGCATATTCCGGGTCATC
GCAAATGAGGATGTTGTCAAAAACAGAACCGGCTTTTACCTGCACACGAGTATGCTCGAA
GTCAATGTCAACTGTGTTTCAGTCAGAACAACCAATAATAATTATCAGGAAACATGTATC
TCCAGAAAACCACTATATATAACATATGGTACCTGCCAAACTTCAATTCCAATATACTTC
AGAGGTTTCAGTACATATAAATCTGGATCATCCTCAAACTCTGCAGAAGTGCAACAGTTC
ATGGTTTAAGGCTGTTTGCAAGTTTGACAAGAGTCAAGTGTCTAGTTCAATACCAGTTTT
CCTATTTTCTTACCTGGATTATCAATCCATGGGATCTTCCATTTACCCTTGTAGTTAGGG
TTCTTAATTTTCTGTGGGCATAAGATGTGAGAACATGAAGTCTAGCAAAGAAATAAAGTA
GCACGAACGACTGGTGGACAAATAACAAGACAAACCTTGCGCTTCCATTGTCCTTTGTAT
GCTGGATTCGGTATCCTTCTAGGTTTCCATATGCCATCATCATCATCGTCCCACGTGTCG
GGCTGATTAATAACAAAACATGCATATATTTGTCATCATGTGGTGTGCTTGGTTGTACAG
AGCTTCATCATAAAAATGTTTCTTTAGATGTGCTAGGACATCTACAGTTTATGTGAGGGT
AATTAGAATGCTTCAAATGCAGAAATTTTTCAACAAGACCAAATATGTAGAG