morexGenes - Barley RNA-seq Database

Contig contig_220973
Source Contig contig_220973
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_220973 (5922 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_220973

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_31648	1	1731 bp	MLOC_31648.1	Available	Available	LOC_Os07g35050.1, FRAME:-3, EVALUE:4e-32, 13107.m03580 protein OsFBX237 - F-box domain containing protein, expressed
CDS Structure of MLOC_31648

Contig Sequence (5922 bp)

>contig_220973 5922 assembly3_WGSMorex_rbca.fasta
GTCTCCGAGTGGACCAGGTTCGTCCATGGGTCGGTCAGCGCGCCGCCCATCTGGTCGGCG
CGACACCGCAGCAGGAGGCCACCTACCTCCAACACTGGAGGGCGCGGCGCGTGGCGAAGG
AGCGCACTGACGGCGTGCGGCACATGGAGCTCGAGCGGGAGGCGGAGAAGGAACGGCTGG
AGAGGGAGGAGGAGTAGCGCGCCTGTGATGCGCTGCCACCGCCACGAGCATAGCCCGCGC
CGGCGGGACACATGACGGAGGCACAGGTAGCGACGATGTGGAACACGGCGTTCCCCTCGG
CCGGCCCTGCACCGATGCTGGTTGACCTCACCTGCCCCGACATCGACGACGATGACACCT
AGGGCATGCCCGTAGTTTAGGTTTTTTAATGCTTAACTAACGTAATGGCGACTCGTGGAC
TTTTGTCGACCTTCGTGGCCATCTTTAATGTTTAAGTAATGTATGTTTTTATTTTCGGAA
TTGTTTCAAAAAAATCACGCGTCGTCAAGATAGATCGGGCCAGCGTTGGGCGCATGCGCC
GACCCAAACACGGAAATGGACGTTGGTGTCCGCCGAACCGACCCAAACGGACAAAAGGCG
GGCAAAATCGGCGTCTGTTTGGGTCAGGTGGTTGGAATTGCTCTAATGGTATAAATAGCA
TGCAAGGGCTCAACGGAAAAGGAAATAGCACTAAAGCCCCTGACTTCTACAAGAAGGACT
CCACTGTGGAAACTAGAATTGCAATCAGGTCCTCTGCAGCTTCTCCCCGGATGAAACCTT
GCCACCGCCGGTGACGGATCACTTGGGGCGACAAAGCCTTCACAGCAGCGCACTCGCGCC
ATGAACTCCGATCTAAAAGTGAAACTGCCCCCCTGAAGCATTGTGGCTGGTAGGAATAGA
ACAGTCGCCCTTCAACCAGAAGAAGCGGCGGCATGGTGTTGATAACCAGCAGCCAACCAG
CATCGTAGCCCCGCCGAGACAACCGCTGCTGATGAGATCGGAACCCACCCGCGAGATCCA
GCACTGCACCCATCGCGAGCTCGCTTACCACTCCCATGGCGGCCACAAACAACGACAGAG
GTGACCGTGCCCTTCTCCAAATCAGGGAACTGCGTGAGCTTATAGGAGGTAACGCCAGCG
TCGATCCGCGCCATAGCAGATGATACCAGACCACCGCCATCCACGTGACCTTCGCCGCTT
GCTGCCAGCCTGAGCCGATGCTCAAACTCATCGGCTGGACGCTCCTCATCGGCATAACGT
CAATCCTAAACACCATACCAACTCTTCTACATCAACTATAAACAAAACAACACTGAGCAC
CTCCCCCGTATCTTCTTCGACCGGCGTCCCCAGTGGCAAAGATCTAGGCTCGGGCCGTGC
TAGATATGTTGGGGACGACTCTCAAAGGAAGGAGAGGAGAAAGAGAACGGCTCTCAAAGG
AAGGAGATGAGAAAGAGAGAGGTGGAGAAGAGGGGAGAAAGAGAGAGGTGGAGAAGAGGA
GAGAGAGAGCATTGTTGCATTTGCCTTAAACTTACATTGTTGTAAAGAGTTAGAGCATGT
ACAGTTGGACCCTTCAAACCTCTCTCAAACATGATCAGGCCGTCCGGTTACTGACCAGTC
GGGCCCCTCAAACGCTTGGGCTGATCGACACCCCTCATATCCACCTCAAATATGGGGTGG
ATACGGGAGAGCCTAGGCACGCCCACCACGCCGTCCTGACGGCATGGACCCATGCGGGCT
CGTCCGAAAACCCGACGGTCCGATAGGCGCCTCGATTGTCAGCACGGTGTGAACACCGCA
TGGCGCCGCTCCGGCTCCCCGCCCTTATCCATAGCCGGCTATTTAAGCCGAACGACGTCC
CCTAGCCCTAGCACATCCCCCCTCCCATCCATCGCCGCCACCCGATCCCGTCAGCCATGC
CCCCATGTCACCGCCACTACACGATCCAGCAGAGTCTCTGACTCCTTGGGCGGGTCTGAA
TCCGAAGGGCCGCGGGGCTACCTCGATCCGGAGGAGGATTTCGAGGAGGACGATCAGGTG
AAGGAGGAAGAGGAGGAGGAACTGAGGGTGGAAGAGGACGAGGGGCAGGTGCCGGCGAAG
GAGGCGCCGCCGTTTGCTGTGGGGGAGGACCAGCAGGAGCAGGTGGAGGAGGTGCCGCCG
CTGGATGTGGGGAGGAGGAGGCGCCGATGATGGAGGACGTGGATCTGTGGCCGGAGCAGC
TGGCCATACTGATCTCCAACCGCTCTGAGTCGGCTGCGGAAGCCAACCGTCTACGTCGGG
AGCAGATGGAGGCGACGCCGGCTGCGCATGAGGCGGCCCAGGCGGCTTAGGCTCCGGCGC
ACGCGACTCAGGCTCCGATGCACGCGGTTCAAGCTCCGGCACATGCAGCTCAGACCATCC
CTCACGATGACGAAGAGTAGTATGTAATACGTGGAAAGTACCCTTTTGAGCTCGAGCTCA
TATACACCCGCATGAACAATAAAATAAAATAAATGTTTTAAAAATTCTCCATTTTTTTAT
GAACTTTGACAAATGTTCTAAGTGTTTGCAAATTTTCATCATAATATCACATTGGTGTAA
GGCATGGCAAAAAAAACAGCGTTTCAAAATGCTTTCAAATGTAGCATTTTCATAGCATCG
TTTTTTTTTTGTCATGCCTTACTCGAATGGTATCTCATGATGAAATATTGCAAGCACTTA
AAACTTTTATCAAAGTAAATCATAAAAGACAGAATCTTTTGAAATGTTTTTGAAATTTTA
TTCAATTTTATTGTTCATGTGGATGCATTTGAGCTCGAGCTCAAATACCCCACATCCGTA
ATTCGTAAACTATTTATTTTGCATGTTTTTATATGAATCTAGGAAATGAAATATATAAAG
ATTGAATATGAACAAACGTATTTAAAACATAAACCATCAGTGTCTGTAGACGCGTATGGA
CGCGTTTGAAGGATCGGATTTGTTAGTTGCGGCTATGGAGGTTCTTAATAGGGAAAAGAG
ATCTATTTGGTGTCAGCGAAAAGAAAATATAATCGTCTTCCACAGTTCTGCTGAACTAGA
CTCAAGCAATCAACGTCTACAAGCAAGCTGGCTAAAGCGTGCTACTCGCCCGTCAAAAAA
TATAAGATGGTTTGTATCGGAAATTGTTTTTTTTTGCTCGGCTTCCATGGTGGCTTTTAA
ATTTAAAATTCAAATTTTTAAAAAATTCATATTTTTATATTTTAAAAGTTCTGGAAAAAA
TACAGACATAAGTGAGGGTGTTACACACATGTGTGTAAATTTAGAGAAAAAAATACGTTA
AAATGAGGCCTATACAAAAAGACAAATTTGTGGCTTTTTAACGCATAATACTATTCATCG
TTTCAGGCCATGAATTTGTCTTTTTTGTACAGATCGTATTTTAAGGTATTTCATCTTAAA
AAATTACACACATGCATATAACATCCTTCTGTACTTGCATATTTTTCAGATTTTTTAAAT
TGAAAATTGATTTTTTCAAAAAAATTAAGCTTCATGGAGCTCGGCCTCCACACGTCCGTT
CTCGTTTTGGATCTACTCCCTTCATTTCATAATATAAGAGTGTTTTTGACACTAATATAA
AAACGTTTTTCACACAATACTGATGTCAAAAACTTTTAAATTATGAGACGGAGCTACCGA
GAGTATCATACATTGACAAACTAAAATGAATGAACAAACACACTAAAACGTATCCATATA
CATTTGATTTACAAAAATGTAAAAGCATCTTATATTTGCAAGAGGAGGGAGTGTTATAAT
GTTCTACTCCCTCCATACCATAATATAAGAACGTTTTTTAACACTAATGTAGTGTTAAAA
ATGCTCTTATATAATGAGACAGAGGTAGTAGTTATTTTTCAGCAGCATACAAGAGAAAAA
TTGGTGTGGAAACAAATATCACGTAACCAGCATCAACTAGGAACCTATTGTCCTTCAAAA
GAAACTAGGCAGTTTTTAGCGTTAATGCAAGCCTTCAGTTTAAGTATTTCCATCACATAC
ATCATGCTATAGAAGAAATCAGGACCAAGTTCTTCTCAAAACATACACATGTCTTAGGAA
ACAGAAACTCAGTCAGAAGTCAATAGTAGGGCCAGGGAAATAGGAAGGTGCTATATACGA
AAACTATCATCACAGAGACATAAAAGGCAGCATTTGAAACTTAAACACTAAACTTATATG
CAACTTGGGCAACATCATTTAATAATCTAGCATACATGAAACAACCTTACAAGAATGTCT
CAACTCCTTGCACTATTACTTAGACCAAAAGCATGAGAAGGATACATCCAACCATGGGCA
TAATAGATCAACTAATTATACTAGATCTAACCAAGTTGCTACCTTCTGCGTAGATGGACG
CAGCACATTCAGTGCTTATTTGGGAGTGCCGGTGACTCAGAGAAACAGGGAACATAAGGT
ACAACATGCATATCTGGAGGTTCGTTCCTGAATGTCCTGATAATACTCACTAGCTTATGG
TCCATGTCATATGATATTAGCTTTTGGTTCCGATATAGAACAATGAAAACAACATTTCCA
TCTGGATGCATGGCAACCACATTGTAGTGATTTTTGTCAACTGTGCAACTCTTTTTTGTG
AACAGCTCCACAAAGCTCACAGTATGCTTCAGGACCCAATCTTGAGTATCATAGTTCTCA
AGAACCCAGATGGACAGTTCAGCATCAGATGCTTGATTGATGTAATGCAGGCGCCCCTGT
GATTGAGCAATATAACCAGGGTTCGGTCGGTGGCTCCTCTCAGCCATCTTCGGCACTGTG
ATGATCTTTCGTGTCACCCCTTGCACATCAACAACAACAATCTGATCCAAGATTGTGAAA
TGCAGCATGCTGTTGAGAACAGCACAACAGGAGCTCTCAAGTTCTGAGCCCTGGAGACGC
CATCCTTCCAAATCATGTTTGTCCCAGTCACTTTGGATTGGACTCCAGTCGCTTTGCATG
TGAGTCCACTTACCAGTCTCAGAGGAGTAGACTTGCACTGATGTGCGGGACACATCTCCA
CCATCATCTTCATTCTCTTCATCACAATCATTATCGTCATCAGAATGTATATAATCAGGA
ATATAAATATTGGGATTATAACGTTGCTGATGACGAAGTTCCCAATAATCAGGAACATAA
CCATCGTGTTTCCAATGATCAGGAACATAATCATCATTTCCCTCGTCATCCCCATCCCCA
TCCTCATCCTCATCCACCATGAACCCCTCCTCCTCAATCTTCACCAACTCCGCAAACTCC
CAGCCGAACTGGACAAGGTGGAAGTGAGAGGAGACGGTCGGATCAAAAACCAAATAGCTG
TATCTGTCTGGGGACCGAGCATACTCCGGATCCGGAGGACCGTATCTGGGCACCTCCGCC
CACTGCTTCGTGGCGGGGTTGCATACGACATAGCCCAATAGTTTATATGGCCGTGGCTTC
TTTTTGTGCTTGAAGAGGAGGAGCCCGTTACAAGAATCCAAGAAGCTGAGAGTCCCAATC
CCGGGCAATTTCTTCAGGAAGGAGAGGCTAGGGTCGATCTGGGGAGGCACGGATCTAGCA
AGCAGATTGGTGAAGCCGACGCGCTGCCTGTGGGTCTCTTTGCCAATGAAGAAGAAGCCT
TGCAGGGTTTGGGGGAGCTTCTTGCGGTGGAGGGGATCTTCGATGAGGTTGCGCCAGGCC
TTCGCGACGCACTTGGAGCGGTAGACGGACCTGGCGGGGACGCGCGCGAGGACCTCCACC
AAGGAGTCTTCGGGGAGGTCGGCGCTCGCGCTCCGCTTGGGGCAATCCATGCCGCCGCCA
GTGGGCAAGGAGGAGCGAGCTGCGAAGCGTACCGATATCAGCGGATGCGATGCGAGAGAG
GAANNNNGGGGGGGGGGGGGGGCGCGGGGCGTACCGTCGCGG