morexGenes - Barley RNA-seq Database

Contig contig_2190555

Source Contig contig_2190555

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_2190555 (330 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_2190555

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_31453	1	323 bp	MLOC_31453.1	Available	Available	LOC_Os11g16246.1, FRAME:+3, EVALUE:4e-12, 13111.m09138 protein retrotransposon protein, putative, unclassified

CDS Structure of MLOC_31453

Contig Sequence (330 bp)

>contig_2190555 330 assembly3_WGSMorex_rbca.fasta
CTGGCTGCGCTTACCAGCCCACACACTGGAGCAGGATATCTCCATTCAGGATTGGTGGAT
TAGGGCGAGAGATGCAACCCCACCATCACTCCGCAAGGCGCTGAGGTCCACCACGCTGCT
AGTTCCATGGATGATCTGGAAACATAGGAATGCGTGCGTTTTTTATCATGCCACTCCGTC
GTTCTCCGAGCTCTCGGATGGGATCAAAGATGAGATGAGGTGTTGGGCTAGAGCCGGGGA
CAAGGGGCTTAGGGTAGTCTTGCCCCCATCCTGGGATGTTCACTGAAACTGCTTGTAACC
TGCTGTAATCGTCTCCTCTGAGACTGACTT