morexGenes - Barley RNA-seq Database

Contig contig_218189

Source Contig contig_218189

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_218189 (2857 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_218189

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_31360	1	1350 bp	MLOC_31360.1	Available	Available	LOC_Os08g19420.1, FRAME:+1, EVALUE:3e-172, 13108.m02022 protein O-methyltransferase, putative, expressed

CDS Structure of MLOC_31360

Contig Sequence (2857 bp)

>contig_218189 2857 assembly3_WGSMorex_rbca.fasta
CCGAGATCTCGCGGAGCGTCACGCGGACGGCCTCGCAGCAACTAGAACCACGACCAGAAG
CTACTGGTTTGGCTGTGGAGAAAGTGAGTGGATAAGATGGAGCGGCTGGTCTTTCTATGA
ATTTGGTTAAGCAGACGGGCGGCCGGCCGGTTTGTTTAATTACTTTTTTTTAAGTGAAAA
AGAGGACAACGGCGGAGGGTCGTTGGATTAGCGGGGAGTACCGATAGGAGCAGGCTCGCG
GAGCAGGCAAGCCCCGTCCCCGACACAGAGTACTGCCCTTGTCATTACCTATCCACGTGG
CATAGCAGCTAGTGGAACGCTGCATGGTGGGCTAGTGGCAGGTGGCACAATAGTTAGTGG
TGCACCACGCGGCACAAACCCATTTTCGATCAATTGGCTGCATGTTTCGCCGTGGGAAGC
TCGAGCCTCCTAATTCATGTTAACGTGCTGGGGAGCCTATATATCAGGGCATGCTTGATC
ACACTAGGATGTACCTACACACCTTGCGACACCGTGCAGCTCAAAACCACCATGGCGACC
TTCTCCAACGAGGAGCTTCTGCAGGCGCACGCCGAGCTCTGGAACCTCACCTTCGGTTAC
CTCAAGTCCATGGCGCTCGACTGCGCCATCAAGCTCGGTCTCCCAAACGCCATCCACCGA
TGCAGCGGCGCCGCCACGCTGCCGGACTTGCTCGACGCCATTTCTGTGCCGGAGAGCAAG
AAGGCGCACCTGCCTCGCCTCATGAGGTTCCTCGCCGCGTTTGGTATCTTCACTGTTAAT
CTACCTGCTGCAGGGGAGTGCGGGGATGGGGAGTACGGCCTGACGCCGATGTCTCGCCTC
CTCGTGGACGACGCCGGCGCCAACGGGTCGTGCGGGAGCCTGTCGCCGCTCGTGCTCTCC
CAGACAACCAAGTACCACGTGAAAGCGGCCTTGCACCTGCCGGAGTGGTTCATGAGCGAC
GACGGCGCGGCGGCGGCGGAGACGCCGTTCAGGATGGCGCACGGCACGGACCTGTGGGGC
GTCATGGACCGTGACCCGACGATGAACCAGGTCTTCAACGCGAGCATGGGGTCCGACATC
CGGTTCGCCATGGACTTCGTCGTCAGCAACTACGGCGACGTGTTCGAGGGGGTGACCTCG
CTGGTCGACGTCGGCGGCGGGACGGGCTCCGCGGCGAGGGCCATCGCGAAGGCCTTCCCG
CACGTCAAGTGCTCCGTGCTCGACCTCCCCAACGTGGTGAATTCCATCCCGTCCGACGGC
GTGGTCGAGTACATCTCTGGTGACATGATGAGCTCCATTCCAACGACCGATGCGGTGTTC
CTCAAGGTACAATTTATACAGTAGTTAACATGAATGCAGATCTTGTTTTGTTGTGAACAA
TTGCTCTATGCTAATTAATTCGAATGTTGATATGACAGTACGTGTTGCATGACTGGAACG
ACGAGGACTGCGTGAAGATATTGACCCAGTGCAAGAAGGCGATCCCCAAATCAGGCGGGA
AAGTGATAATCATAGATATAGTGGTCGGATCCCCTTTGAAAGCCATGCTCGAAGCCCAAG
CCTCGTTTGATCTGCTGATGATGGTGATCGCAGCGGGCAAGGAGCGTGACGAGCATGAGT
GGCGCAAGATTTTCATGGACGCAGGGTTCAGCCGCTACAAGACACGGCCTGTGTTGGGGT
TTATGTCCATCACCGAGCTGTATGCTTAGCCATGCATGTGTGGTCACAGGCTCACAGCAG
ATATCTGCTGTAAAGTATGTGTAAGCGTTGGCCATGTGATGTTCATTGCGGTTGTGCGGC
AAAATGAACAAAGTTGACGTATGGTGAAAACAATTTCATAAAGTGAATCGTAGGTGAACG
AATTTCACTTAACTGGCACTTTTGTGTGGCGTCTGGCATATAGACGTTGCACTACACTAT
GCAACGCCTTACTGACAGGCAACACACCTGGCGAGCGTGGCACCCCGGACCCTATTTCTA
GTTGTGCAACGCCTAGTTAAAAGGAGCTACGCTATCTTATGTTAAAACTAATGTAACTTT
CAATCCGTACATTCGATGAAAACGTGCCTTATATGAATGTTGTGCATTTTTCTGTGTTCT
ATCCAATGATGGCATTTTTATCTATGTCAGGATCAATTTGCTAGATAAAAACTCTGTTGT
AAAAGTATTTAAGGTTTAGGGTTTAAGTGATAATATTGATCTAATAATTAGAAAATCTTA
TGTCTACTTTAAATACATGTCATTTTCATACCCACTAAATATATGCATCATTATGTTTTA
AAACACTAAAGTACCTAAGGCAATGTTATGCCAAATTGAGACTTGTTAATTTCATCAAGT
TCATAAATGTCAACAGAACTTTGCATTTTGTAAGTATATATACTTATATACTCTTAAAAT
TTAGCACCTATAATATTTGTTGTCAGTAGCAAGAGCACATGTTCTCTGATTTGAACTCTG
TTTTTAGGCTATTGAAAAAAGTTGTAGCTACTTGTATTGTGTACTGCTATATATATGTAG
CTATTGTGTACTGCTCAGTTTTGAACTGTACAAGATCGGTACAGAGTGAGTCAGCTTGAA
CTCGATAGCCTAGGACGGCCTCGTGCAGGATGACAAAACTGAGTTGACAGGAAAACTGGC
CGTTAGTGCTACTAGTTGGATTGTTGGAAGTCAAAGTTATGGAAACTTGCAAAGTTCATA
AGTCCATGTCGGATGTAAGAGGGTGTTTGTTTTCAGGGACTTATTGGTTTTGGGACTTAA
AAAAGTCCCTATAAATCCCACCTAAACCAAACACTAGGGACTTATTGGGACTTATTATGG
TTAATTGGGACTTATGAAATAAGACTCTCTAATAGGA