morexGenes - Barley RNA-seq Database

Contig contig_213912

Source Contig contig_213912

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_213912 (1500 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_213912

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_30915	1	625 bp	MLOC_30915.1	Available	Available	LOC_Os02g21970.1, FRAME:-3, EVALUE:3e-140, 13102.m02462 protein 26S protease regulatory subunit 6B, putative, expressed

CDS Structure of MLOC_30915

Contig Sequence (1500 bp)

>contig_213912 1500 assembly3_WGSMorex_rbca.fasta
ACCTCCCCCAAGTACTTCTGCACAAATTCAGAACCAACCACTCTGATAAAAGCAGCAGTT
GTATGATGTGCCACAGCTTTAGCAAGCATGGTCTTCCCAGTGCCTGGAGGACCATAGAGC
AGCACCCCTCTTGGAGGATCAATACCAATCTGCTTGTACAACTCATGGTGTGTCAATGGT
AGCTCAACTGCCTCCCGAATTTCTTGCTTTTGAATATCACATCCTCCAATGTCCTAAACA
TAATCAGAACATAGCAAATTGTTATTGACTTTCCTTCATTTATTGTATGTATGAAAAAAC
TGCAGAACAGTTAACAAAGATACAGACTCCATAATAGAATGAAAAGTTTCGGTCATGTTA
TGCACATAATTCTCAACAAACATTTTAATAAAACGATCAATCTTGGTTAACCTTAAGGAT
AGGAAAATAGACAATTGAATCATTGCATGGACATACAGATGCTGAGGTAAGAAAACCTCA
AGACTGACTGGCTAAGAGCTTCTACTGAAGAAGAGGCTCTGTGCTACTTGCGTTTCTTTG
CTTTTACTGCCTCTAGACTGTATTAAGTATTAAGCAATACAAGCATAGAATGTACTACTA
CTAACGCCTACTTGGCTCTACTGTGTAACTTCATGGTTCACAATATGGCACAACCCCTTC
CAGATAATCTGGCATGGCTGGCTCCAGCCGCTGCTGTTAACGCTCTTCCTCTGTCTCGGT
TGCTGGTAGTGTGCGTGAGGTGGACTGAAAACTGAAAATACTAAGTAAATTCCCAAGACA
CTGTGTGGGGAAAATAAAATCAGGATACAGACCCACAACAATATAGACCGATTTCAACTA
TCACTATGGAACAACAATCGCTACGGGGGACTAATAGATCCCTAAAATCTGGAATTACAA
AATTATTCTCCACGGGGGATGAGACGGGCAAGGTAAACAAAATTCCTCGGGGTTCATACG
GATCGGAGAAGTCCATGAGAAAACTCACCGAATATAGGACGTTGGGCTTCTCCGACGAAG
CGAGCAGCGAGATGCTGGAGTCGGCCTCGGGCGGCAGCACGTCGACGAGCGCGTTGGAGT
GGCGGTGCAGGGCGACCGACGCCGACGGCTTGAGCAGCTCGCGGTTGATGGTGCTGAGGA
TCCGCACGTAGTAGTTGCTCCCGGTGGTGGATCCGACGATGCCGTTGTTGCCGTCGACCA
TCTCCATGAACTGGCCGATGACGAGGGGCACGGACTGGATCCGCTTGACCTCCTCCTGCG
CGCGCAGCAGCTCGCGCTTCAGGTTCTTCTGCTCGTCCTTGACGTACTCCTCCTGGATCT
CGACGAACTCCATGTGACGCTGGAGCGACTTGAGGCGGCCGTAGAGGTCGTCTTCATCCT
CTGCCGCGGAGGAGGAGGAGGAGGCGCAGTGGGCGGCGGTGGCGGGGTAGGAGGGCGGGG
GCGGCGGAGCGAGGGCCGCGGGGGGGTTGGCCACGGGCGCCGTGGGTGGGGTTCCGGGGC