morexGenes - Barley RNA-seq Database

Contig contig_213513

Source Contig contig_213513

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_213513 (2535 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_213513

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_30872	1	619 bp	AK357563	Available	Available	None
MLOC_30871	1	615 bp	MLOC_30871.1	Available	Available	None

CDS Structure of MLOC_30872

CDS Structure of MLOC_30871

Contig Sequence (2535 bp)

>contig_213513 2535 assembly3_WGSMorex_rbca.fasta
TAAGGCTCATTCAATGTTACAACTCCGTGAACTCCAAGTTGCTTCAAACGTGGAACATCA
CTTGGGAAAGGAACGGCTCCTAGCAAAATACACTGCACGTGGAGGTTGGACAAATTAGGA
GGTCGGTCTTTATAGCAGAGACAAGTCACAGTATACACATCAAAATACTAAAATGCACAA
AGCAAAAATCAAGGCATGCTATCTAGGGATGCATGCGTCCTTTCAGCACCGAATAAACAG
AAGGCTTCTGTGGTCCTAACATGTCAACATGTTCACCCGCCAGTGCCAAATGGAAGACCA
CAAGACAATCACACGGAAGAACATGCTGGAAACCTGTCAATGCCACATCCAATCAGAAAA
TAATCAGTTATTCCTAATACAGTAGTTGAGCATTCTTATATAACTCTGGCATAACATCAT
TCTTTTCAGTTTGCCGCTACAAGGAAGTTCATTTCATAGATACAAAGGGAAAATAATTAA
CTGTCCACGAATATAGTGTTATGAACCACATCACCGCACTTCAGCCAAGAATATCCAGTG
CAATTTTTTAATCCACCTGCAAAATATGTGTGAAACATGGTATATGTAATCTATCATCCA
TAGTATATTAATTATCTACTGCATCATACAAGTGGGTGCCAACGGCCACATGAGATGATG
CCTCCAGCAATGCAACCGTTTTTCAGCATCAATCACCACAGACCATTTTAACAGCAAGAT
AACCACCAACAGCAGCATCTACAGCACAGACTTGGCCAGAAGGAGCAACAGTGAACCCAG
CAACTACAAAAATGCCTGCACCAAACTGTTATGTATAGCGGCAGAAATCTGGAAGAGCGT
GTGTCAAATCAAAAAATGATGTACCCTGAGAGCATGAAATGTAACTGTTACATACCTTAG
TGAAAAGCAGCCAAGTAGTCGTTAACATCCAACCAATGAAATAGAATCCCAGTTAACATA
ATTTAATTGTAGCTGTCCAGAGGAGACAACGGGGATCTGCTTGTAGCATGCTGCAAGAGC
AAATTACTCTACAAACGACAATCAAGAAACAACAGACATTTGACACCATAATTGATGCTG
AGACTACTAAATGTACAATAGGCAGACCATCATCGCGTTAATTGATAACTGAGAACAGCA
TTTCAGAGTCTCTACACAATGAAACTTATGAAATGACAGAATTAAGTAATACAATCAAAT
GGCAGATATTTTACAGCTCCTGCAAACTGCAGGACTTGGAGTTCCCTGTTCAGCTCAGCT
CCACCAGCTATGCAGGTAGTGGCTCTTCCAAGACTGTCAATTCAAAACACATCATCAATA
TACCATAAAAATTATTACATGCAAATGAAACAGGCTAAACTCTAAAAATGAAGCAACATG
AGATCAAAAACCTTTTGTTTTTTCTGTAGCTTCAGGCCTCTCTGGTGCTTTAGTAGGTAC
ATCAGGAAGCTCAATAACATCATCAATGTCTTTAGCTGGAGCTTCAGTGTAAGCCGTTGC
TTTAGGTTTCTTTTCAGGTTGTACTTCAGTAGCGGGAGCATCCGGCAGAGACTCAAGTGC
AAGCTGAAAAGAACGGGCGACAACAAAAATTTAGCACAGAAACAAATCTTCATTTAAACT
CAGAACTCGAAGTTTATTATGTTGGTATTTTTCTTAAAACAAAAAGCGGACAACTGTTTG
AAGCTTTTAGGGAAAAACCTCAGCTTCCAAGTTGTCGAATTCAGCCATGACAGCCTCCTC
ATCCTCAGCAGATAATTGTTCACCCAGAGCGGCATTTATTTCCTGCAATCAATATCAGTT
GATAAGCAAAGTAAAAAAGGTTACATGCATTGTCATTAATGAGCTAAGTAAAAAAGTTTG
CAGATGGTGAGGTCACAAGAAGTGACGAGAACTGGGTTCAAGTAATACAGTGTTCCCGTT
TCACTCCACTTCGTCATGCCTCCATCCCACGTTTTGCTTCGCTTCGTCGAGTCTACGTCC
CATGTTGGTTTTCATCCACGCAATGCTCGCCGGTTTTTCTGGGGACTTTGCTAGACGTAC
GGACTTTTACGGGGGATTACAGGGTGCTTAACATTGATTGGCCAGAATTGATTAAGGCGC
ACAGCCTCACCGTGAAATTCAGGGGGAGGGCCAATTAGAAAAACACATAGTTCCCAGTCC
GTAAAACTCTGTAAAATGTGTCCGTAAGTTTAGCATTATTGGTTTTCCTGGCCCCTCCCC
ACTACCCCACCCGATTTTGCCCCGCAACAGAAAAAACTTGGAAACCAGATCACAGGCAGA
TCGTTCTGTACATATCGTTCCATCCATGATTTCCTCCATCAACGCCATCATGCCTCTCTA
TGCCACACCGTCGCCCAGCACATAGCACCGCCACCTCGCACCGGAACGAAGTCGGTCGCC
ACCCTTGGACATCGTTGGCTCGAGCACGCAAGTGTACAGGCACCTCTTGCATGGACATTG
TATGTTTGATTTCCCTTAATTAAGGACCCAACTACGTCGTAAGGCGGATGAGGCGGTACG
CTGGAGGCCGCTGCC