morexGenes - Barley RNA-seq Database

Contig contig_213434

Source Contig contig_213434

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_213434 (2396 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_213434

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_30868	1	2277 bp	MLOC_30868.1	Available	Available	LOC_Os02g21220.1, FRAME:+1, EVALUE:7e-20, 13102.m02378 protein hypothetical protein

CDS Structure of MLOC_30868

Contig Sequence (2396 bp)

>contig_213434 2396 assembly3_WGSMorex_rbca.fasta
GCCGCCTGCTTCGTCGCCGCCATAACATCCAGCCAGACCAACATGGCGTTCTGGCGCCCG
GGCATGGACTGCTGGTTGTCGGCGCCGGTGGGGCCGACCCCGCGAAACGCCCAAGACCTC
ACTTACCACGACGGATGGTTCTGCGCCGTCGACTCTGATGATGGCCTCGTCTCCTACAAG
CCGGAAATTGGCGCTGATGGTTCTTCGCTTACTATTCGACATCACGACTATAAATTAGAT
GGTCACCGGACCCAGGCCGCGCTCGGGGAGATCGTCTCCCGCTACCTCCTGCCATCCGCC
TCCGGTGCCGATCTGCTGATGGTGAAAAGGTACGTCGCGCCGGCGAAAGGCGGCACCTGG
AAGTTCCAGGTCTACAGGCTGCAGGAGGGACAGCCGGCTTCCTGGGGCTTGTACCAGATG
ACTGGGCAGGTGCTCTTCGTCGGCCGGGCCTGTTCCAAGGCCTTCGACATGGGGCACGCT
GGCAACCCGGGCTACATCTACTTCCTCGACGACGTTTACCCTGGCGGGCCACATAGTGTC
CTCCAGCAGAATGAGTATCCATGCGCCGACACCGGTGGGTGGCGTTACTCAGTCCCCGGC
GAGATTGAGGATTGCCTGCCATGGGCGCCCCCCTCGGACACGTCGCCGTGCATTTGGTAC
CACCATTAATTGAGCTACCCAGCAGGTTCAGTTTGAGGCATCATGGAGATTTCGATCAGT
TTATTTGGAGTCTTATTTGTTGTTTGTATTTGCTCCTAGTCAGTGTTTGTTTGTTGTTGT
GGTTGTGTCCTCGTCGTTCTATGGGAAACTGCATATCCAGTTTGTTGTATGCTCCAGGTC
AGTATTTCAAACTATTGTTGTATGTCATCGTTGTTGTCGTCAGTTAACTTGCAGGCTGTT
TTGGAACTCATTTCATCTATATGAATTCTCAACTATTTAGACTGCTACCAGCTTTATATG
TTGTTTAAATTGTGTGTATGAGTTTTTGGTGTAAATTCTACTTCATTTTAGTAGTCCGCA
CAGTTTCTTATTGAATCATATGATTGCATGTCTCAGTGGTAGAGGTGTTTTTCATGTCTT
CCCTGTTTGCATTACACAGTTGATGAGATGAGCAGCAACGGAATATTTGATGTCTGTTTA
GGTGTAGAGCACAACTAGTACCAAATAGTGATTTCATGTTGAAGACTCGGTTTTTCTTAC
ATGACCCTTCTTCACTTCTCAGCTGATTGTTTGATGTGTTTTAGCGGCTTATTACATCGT
CGAATGTGGTTGTCATTGAAACTGAAAGTTCCATATCCAGTTTGTTGTATGTGCTTAATT
TGAAGACATTTTTCAAACTCATTTCATCTATGAAATTATGAAGTATTTAGACTGCTATGC
TAGCTACCTATATAGGTTTGTTTGATTTCTATATGTTTCTCATTTATTTTCTGGCTTCCT
AATATTTGAATTATGTGCATGATATTCTGGTATAAATTCTACTATTGATTTTGATGTATT
TCGCCCTATTTTCAGTAGTGCACACAATTTGTGAGTGTAGCGTACGATTGCATATGTTAG
TGGCAGAGATGTTTTCCATGTCTCCCTTGTTTGCATTACACGTACGAACCAGCACAGTTC
ATGAGATGATCAGCAACTGAATATTAGATGTCTGTTCAGGTGTAGAGATCTACTAGTTCT
GATTGTATGTTGAATACTCTAGTCTTTATTAGATGACCCTTCTTCACTTCTCAGCTGATT
ATTTGATGTGTTTTAGAGGCATATACTTATTATATAATCGATGCGCTTGTCGTTCAAACT
AAAAGTTCCATATCCATTTTGCTGTATGTGCTTAATTTTATGCCCTTTTTCGAACTCGTT
TCATCTATCAAATTGTGTACTATTTAGACTGCTACTAGCCAAAGTTTTAAATAGTGGGCT
ATGACTAATAGGGGCGGCCCTCCAGCGCTATTGACCAATGGAGACCGGGTTCCAGTGAGC
TCGTTTTTTGAAAAACATATTTATACAACACAACAAAATGTCATTTTTTGTACATATAAA
AATACATGTTTAACACGTTCGAGAAAAGTTGCACAACAATATAGTTTGATACGTGGCGTA
CACAAAACAGACAAATACGTAAATGAAAATGAGCCAATTTGTTCTTGTTGTTGGGCCTAC
ATTTCTGTGTTTTCTGCACAACATGCAAATCATACTATTTTTGAATGAAAATTTCCAGAT
CCGTCACGAATATGTATAAGTTTGCACAGGATTTTTTTGAATTTTTTTAATACTTGGAAA
TACCATTGTTCAAGATTTTGAAAATAAATGCTCCATGGAACCCGGCCTCCATGTAGCACT
CGGCTGTAGCCACTATAACCGGCTATTTCATGAGTTTAGTGGGCTATACCACATAG