morexGenes - Barley RNA-seq Database

Contig contig_20940

Source Contig contig_20940

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_20940 (2391 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_20940

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_30413	1	2357 bp	MLOC_30413.1	Available	Available	None

CDS Structure of MLOC_30413

Contig Sequence (2391 bp)

>contig_20940 2391 assembly3_WGSMorex_rbca.fasta
GTCGCACGCGGGGCGACACGGGAGGGCCAAACAGCGAGGGGGGTTGTGGCTATTCTCCCA
TGATTGCAAGGACATTAGTTGTTGATGAACGGAGCTACAGAAGGAAAAAATGCCCATATC
TCTAGGCAAATGTTATTTTGCTTTCTGTTTTGAGAATTTCGCCTTATATTTTACTTTCAT
GAACCAAAGAAGGAATACAGATATATCTCGAGAATGACATTTTACATTTCCTGTAATTTC
ACCCATAGTTAAACTTGTGGGGGCACATGTACGATTTGCAAGAGGGTACTGATTGTCGGC
TATGATCTTCAACAACTTTTATCTGTTATGGGTCAGGGTTTTGGCATTGTAGATTATAAC
CATTAGTGACGAGGTAGAGAAAATAGTCCTTGCTTGCCTTTGAAACCCACGGCAACTCAT
ATAGCCCTCCATACAAACTGATTCTAGCTTGTCCATGGCAGTGAATTTTTCATGGAGTGT
ACTGTTTCTCTCTTATTCTTGTTCTTGTGTTTATGTTCACTGTTTTGTGCATTTAGTGTT
ATTTATATATTTACTGTTATGTACAACTCTTCAGATGATATTCTATTTGGGATCAAATGT
CTAACACCGCTGTTGTTTACTTTACAGGTTGAATCCTCGGTTGGTCCTTTCCTCTTAGAG
AAGATATATTCCTTCACGTGAAAGAGCTGTCACTGCCAGAACACAGTAAATATGGTAATG
GGGATAACTGTTGCCTTTCTGATGCCGAAGGTTCTATGCCAGTTAACTGATACATCTAGA
ATTGCGCTCTTCTAGAGTATCAGATTTTCTAGACATTCTAGACATTCCTGAAAAGAGATC
AAGACATGGATTATCATACGATATGAGAAATGGTTAAAACAGTCAAGAGTGATCTTTAAC
ATCTGCCCTAGCAACACTTAGAAGGTCTTGAATGTGGGAGCGTGGACGATTGGGTTCATT
TGCAGGCATTAAGTTTTGTTGTGGTTTTGGGGGAAGAGTGAGCTTGTGCCATAGAACTTT
CTGGTTGTCTGGAAGTCTCCTCTGTGTCACTGTCATGATAATTTCCTTTCTCCACAGACA
AGTTGAAAAGAGTGCTGCAAATTGTATAGGTCAGTTGGTGGATTGAACTGCGACTACCCA
TGATGCTTCCAGTTGCTGCATTTGGATGTAGTCACCAGTTTGGCCAGCAGTGAGGTGTAA
GTCAGTACAGCCGTGTGATGCTTAAGATGTCGGGAATAAAATAAGTTGTTCCGTGCATGG
GCTGGAGGCAATGAAGACATGATTTCAGAGTCCTTGACTCGCGTTATGCTGTTTTGATGA
TCATGATGTTGGTAAGGCATTGCCATCTTGTCAGGACCTACCTACACATAGACAAAGTCA
CTCGTTATGAGCATGATTTTGCCGCTCAAGAGTTTTACTGAAAGTGAAGATCCTGCAAGT
CACCCGTTGTGCACATTGGGAGCATATTTCTGGATTACAGCTGAGAAAGTTGTCTATGAA
TAGAGACCCTGGCCTTGGAACTCCTGGTGGAAAAAAAAAGATGCCCTTAGAGCAACTTTA
ATGGGGCGATCCATTTCGTCCGTCACAGTCAGTTTGGATCGGCGTAGACAAAAATGATGT
CCCAACGCGTCGACCCATTGTCAAAATGGGTCCCTTCGCGTTCGAGCCGATCCATTTCCG
GTCCAAATTTGGGACTGAAATGCGTCAGCGTGGACACGCGCCCCCCTCGGTGTCCGCCCC
AACCACCGTGGTTAACATTATTTATGACGGTCGTCATCGTTGGGCCCACGCGTCAGCGAC
CGTGTCTGGTCTTTTTTAATTCGAGCGTGCGGTGGGTTCCGCCATCTGCTTCCAGAACCC
CGTTTGTCCACATTTAGCCACCTCATCGGCGACCAAATCCCTAGCACACCATGGCCGGCG
GCTTCCTAAACAAGGGCAAGGCCCTGCTCTACCCCGCGTCATCTTTTCACCGGCCTGTGC
GTAGCACACCATGGCCGGCGGCTTCCTAAACAAGGGCAAGGCCCTGCTCTACCCCGCGTC
ATCTTTCCACCGGCCTGTGCGTGAGCGTCCCGGTGCACCAAGCGCGGTGGCACTGGGAGC
ACTGCGTGCCGCTCCCTTACCCTGAAATCACGTTGTCGCATGGCTGACATCTGGATCCGG
AAAGGATTCCGGTATCGGCCGTGCCGTGGTCGATGCAGGTGCATGCGAAGGAGGTGAGCT
GTTGTCGGCGTCTGCTGATGATGGAGCAGCGGCGAGACCCTACGTACGCAGCCGACTTCC
CTAACTGGGAGGTGTGGTTCGTGGTGGAGCACGAAGAGCAGCGCCGTCGTGGCGTGCGCG
AAGTGCAGCCAGTAGGCCTTCGCCACCCCCGCCTGTCGTCAGCAACGAGGA