Contig Data
morexGenes
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Map Locations of contig_208478 (4855 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_208478

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_30330 1 4315 bp MLOC_30330.1 Available Available LOC_Os08g05940.1, FRAME:+2, EVALUE:2e-171, 13108.m00591 protein retrotransposon protein, putative, unclassified, expressed





CDS Structure of MLOC_30330






Contig Sequence (4855 bp)

>contig_208478 4855 assembly3_WGSMorex_rbca.fasta
AACCGTGAGATGATGGTCGATAAGAGATTGAGCATGGCTGAAATTGCAGAGAAGATCAAG
CATGAATTTGATGATGACTTGTCATGCATATTCAACGATGATAACGCGGATAAGCTCATC
CTTCGTATCCGTATTAAAAATGATGACGAAGCTCCAAAACAGGATGAGGATGATGATGTC
TTCCTCAAGAAGATTGAGAGTAACATGTTGACTGAGATGGCCCTTGGAGGCATTCCAGAT
ATTAGCAAGGTCTTCATAAAAGAGAGGAAGGTGAATAAATTCGATGAAAATGACGGTTTC
ACTAAAAAAGCAGATAATGAAGAGAAAAACGGGGAGTGGATGCTTGATACAGAAGGTGTA
AACCTCTTGGCTGTGTTGTGCCACAAGGACGTTGACGCTACGAGGACAACGAGTAACCAT
CTGATCGAAGTGATTGAAGTTCTTGGGATCGAGGCTGTCCGCAGGTCTCTCTTGGATGAG
CTGAGGGTGGTGATATCTTTTGATGGGTCTTATGTGAACTACAGGCATCTGGCCATTCTC
TGTGATACCATGACATACAGAGGTCACCTGATGGCTATTACTAGGCACGGCATAAACCGT
AATGACACGGGGCCTCTCATGAGATGCTCCTTTGAAGAAACGGTTGATATCTTGCTTGAT
GCTGCCATGTATGCGGAATCCGATCACCTGCGAGGCGTCACTGAAAACATTATGCTTGGC
CAGCTTGCTCCTATTGGCACAGGAGGCTGCGGGTTGTACCTGAATGACAAGATGCTGCAG
GAGGCCATTGAGCTTCAACTCCCAAGTTTTGTTGAAAGCCTGGACTATGGCATGACACCA
GCACCTTCACCCATCTCTGGAATGATGTCACCGCCGCTGAGTCCAAATTTCCAGGCTTCC
CCTGTTACAGATCATGCTCTTCAGTTCTCGCCATATGTTGGGGGTATGCCATTCTCACCG
GCCGCATCACACTACAGCACATCCTCTGGGGGTGCTTACCGTCCATCTTCTCAGGTGTTC
AGCCCAGGGCCAGGAGGACATGGCTACAGTCCCGTCTCTCCAGTATACTCACCAATATCT
CCTATCTACAGCCCCACAACTCTGAGCTACACCCCCACATCGCCCATCCATAGTCCAGCA
TCGCCAGTTTATAGTCCAGCATCGCCAGTTTTTAGTCTGACAACTCTTCAATACAGCCCG
ACGTCGCCAGTTTATAACCCGACGTCGCCTATTTATAGCCGGACATCTCTATCATACAGC
CCGACGTCGCCATCTTATAGCCCAACATCTCATGCATACAGCCCGACATCGCCATCTTAT
AGCCCAACATCTCATGCATACAGCCCGACATCGCCATCTTATAGCCCAACATCACCAGTT
TATAGCCCGGCATCTTTTTCATACAGCCCGACGTCGCCATATTATAACCCAACATCGCCA
TCATACAGCCCCACTTCACATTCATACAGCCCTACTTCGCCTGGTTACAGCCCGACATCG
CCCTCGTACAGCCCTACTTCACCGAACTACAGCCCTACATCCCCTGCATACAGTCCTACG
TCACCGAGCTACAGCCCGACTTCGCCTTCATACAGCCCTACGTCGCCCTCTTACAGTCCT
TCACGTGCTTATTCTCCAAGCAGCCCAATGAAGATGAGTCCGTATAGTCAGCTTCCTCCA
AACAACAGGTATTATGTTCATAGCTTTGGCATCTGACCATACATGCATGTCTGTGCTTAT
TTTGCTTACATCTCTGTTTCCCCAGCCTTGCCTCACCAACTTACTCGCCCACCTCACCAT
CATATGATGCACAACCAAGCCCATCATACAGCCCGACAAGGTGAGCCCATTCCAATTGAT
CATCATCCTTGTTTTTTAACTTAAAAGTACGCTGTTATTGTGACAATCAAGACACATGGG
TTTCCTAACGCATTGTCTGAGTGTTGCAGCCCGCACACTGCCTCTGGAGGACCTAGCCCA
GATTACAGCCCAACTTCCCCCAACTACAGGTAATGGTCATCAAGTTAATCTCATCTGCCC
ATGACTGATGAAACTTCACCATTTGCACTTCTGACAATTGTAACTTTCATCGTGCAGCCC
CAGCGCAAGCTACTCCCCGTGATCCACCGAGCCACAAACTAGTGATAAGGACGACGGCGA
GACTGCTCCTTGAAGCCACTGGCTCGTGAAAATGGCTGCTGACTGATGCAGAACCGCACA
CTGACACACTAACATATTCTTGTTTCCTTGTATGTCTCTCAAACAAGCCTTATTTTTTCC
ACTGCGCTGCTAAATGCAGCATTCCACTAGTGTTTATGTATGATCCATGTTACTATGAGT
GGCTTGGTGGCCACTGCTGGGCTGTTCAGAATAGTCAAATCTGTAATGATGTGTTCTCCA
CAGAAATATAATGCTAATGTTCCCACTGGAGCTTAGCCTTCTTATATGTCAAAGTTAATG
CAGCGACGAAGTAAGTAAATGCTAAGACACTCTCCGGCGCTGCATTAACTTAGTTGTTGA
ATACATCGAAGTCAAGTAAGAGAGAATGAAAAGTTTACTCTTGCAAGAAAAAAAATGGTA
CCTGACTTCCAGCGTTAGCAGAAACAACTTGCAGGAGCAAGTCAGCGTATATGGCTGTCA
TCAACTGACAAAAAGGGCAACACCGGCAGCCGCTGCTTCTTGTCCAATCTGTAGTTGGAC
CTTTGCTGCAGTACGTGGCCACCGCCGCATACGCTGAGTTAACTCACTTTTTGATGCCAC
AGAAAATTACATCCATCGACTGTTACTATCTGAATTTGCTGCATCAGAACATAAGATGGA
AAGGTCAAATCATACACATATTCACAGAGCTATGCCACTGTAATTTGTAAGACAGGTGTT
ATTGGCAGATGCATTCATATCATAGAAGAGGCTATTATGCCTTTTGACATTCCCGTAGTT
AAAACATTCAGATAATAATAATCTAAATTAGATGTCCATGTGGGTCTTAATTTGTTTAGC
ACGCTTCACCTTTTAGAGTGTCATGCTTGTACCAGAAGTACATTCTTACAGAACAGAGCA
CTGCACTGGAAAATTCGTGCTATAATAAAAGAAATTCTTGATTGCCTGCTTCAGTTTCAT
GATTGCACGGAAGTTATACTTTCAGATGTCTTAAAGTAGACCATACACTAAGAGCTCATA
TGCGCTAAAGTAGACCTGATCATAGATAAAGTTGTCCAAAAGTTTCTGGTGACTGTCCAA
AAGTTAATGATTAGCCTAATAAACAAATTCTAGAATATCCTACCAGCAAGTTCAAACATT
ATGGCTGAATCACATTACCTGCCAAGAATCCTCTGAAGCTTAACATTTCCAAAGCCTCCT
ACCACGACCAGGCATATTGTGAATGTAGCCATTGCAGACAGAACTTTAAAGATGGTAATC
CTAGCATCCCCACATTCTTACTCTTCTCCAACCGAACATATTCAACCTTATCCAATGAAG
AATAAAAAGACTTGTGAATCATGCAATGGTGTGTATTCCACTACTACTTGTCAAGAACTA
GTGGTATTGGGACTTCAAATATATATTTTTGGGGGTGATTGCAGACAATTCTGATCACAA
TAGCATCTCTTATATAAGGTCAGCTAGGATACAGAAGCTGGTGTTCCAATTTTTATGTGA
GTGTAACCAACTCTGGTAGCATTAGTGTTGCAGCTTCTGAGTAATCTGAAGAAATATTCA
GAACCATTATCTTCATTCTGTGAGCAACATGACAGATGTATGATGCTTCTTAAGCATGTC
ATAACTTAATGAGGTGTGCACCTCTCTTCCCTCATCTGGTCCATCAGTTCAAAAGCCTTT
TCTAGTATGTTCTTATCCTCAAATCCCTTCAACGATGCATTGCAGGTTATTATATTTCCA
GGAACATGCTTCTCCCTCATCTTATCAAATACTAGTTCAATGGCTGAATGAGTATCTCCG
CTCCTGCAGACAAAGTGAATCAAAGTATCGTATATCAAAGGTGACTGTGTTGGGCTGAGT
ACCAAAGGTGACCTCAGAAGGCCGACAACCATCATCTTCCCCAATAACTCATCCACAGCC
GAGAAAAATGTCCTACTTTGCACAAAGCAGACAACAAGGTATTGTAGGTGCACACCAAGC
CTAGCCACTGATAAGCCTCTGTAAGCTCTTCCTCCTGCTAAATCCACCAATCAAAATACT
GTACGCCTTTGCATCCAGCTGAAACCCTGCCTTCGTCATCGACGACGCCATGGAGGGAGC
AAGCCTCCATCAATCGTTGTGCTTGTGTCAATCCCAATATCATGGTAAAATGCATGTTCA
TCCACCATCCCATGGAACAAATTGGTATTGGGGAGGAAAGCCCCACACATTGGTATTGGG
GAGGAAAGCCCCGACCAGAGTGCTGCAGGTCACGGCATTGCCGCTGGCTTCAGGCTAAGC
CGTTCTTTTCCCCTTGAGGAAGTCAGGGGCATGACCATTAATCCTCCCGCTCTTGCGCAT
GCCATCGACGACCGTGTTCAGAATGACTGACAACATCCGAGCGAACGCCCGAGTTTGGGC
CGGGCATTCCATCGAGCGCCCTGAGCGCGCCCGGCTTGGCAGATCCTGTTGACGAGTATG
CCATACGAATACGAGACGACGTCGGGCCGGACGGCGCCGTTGCGCGTGGAGGCTAAAGAG
CTGGGTCGTGCCAGGAAGGCCGAGGACGCGGGCGAGCGCGGCCAAGAGGGAGTTGAACGC
AGAGGTGGCCGGCGCGGAGGACTCCGGCTGCCTGGGCGGGGACAGAGTGGGGGCGCGAAA
GAAGACTGGAGAGGAGTCGCACGGAGGGGGGCGGCGGCACCCGGGGGAGGGAGGC