morexGenes - Barley RNA-seq Database

Contig contig_207054

Source Contig contig_207054

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_207054 (1559 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_207054

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_30172	1	207 bp	MLOC_30172.1	Available	Available	None
MLOC_30171	2	1173 bp	MLOC_30171.2	Available	Available	None

CDS Structure of MLOC_30172

CDS Structure of MLOC_30171

Contig Sequence (1559 bp)

>contig_207054 1559 assembly3_WGSMorex_rbca.fasta
ACCGAACAACTTTGACATCTCCCAAAAATCACAATCTACTAACTAAATCCATTGAAAATC
TCGTAATCCACCGTGAAATTTGTTCAACATCAGAATTGCCTAACTACATGCAGATTGGTC
CATGTTTACTAAAGATCCATCTATCCACCAATATAATAACCACCGCGGCACCTTACTTGA
CCTAAATTAGCATATATCATCAATCATCTCTGACTATCTCTTTAAGATCACAGACATCTA
ACTAAATCCAACAAAAGCTCAAAATCCCATCATGAATTTGGCTGGAAAAAAAAACAATCA
CCTAACTAAATCAAAATTGTTCCAAACTTAATTGACGATCTGTTTATCCACCAATATAAA
ATCACCATTCTCATCTTCTATACCTAAAATCTCATAGTCAAGCAAACATCTTTGACTATA
TTCTCAAGACACAATCACCTAACTAAATCCTCGTAAAATCGCATAATCCAGCGTGAAATT
AGGTTTAGTATCACATCCACCTAAGTAAATTCAAATTGTCCAAGATTAATTAATCCACCA
AACATCTTTAGAGTATCTCCTCAAAATCGCAATCAACTAACTAATCCATCAAAAATCTCA
TAATCGTCGCCTAATTAAATCCAAATTGTTTCAAATTTATTAAAGATTCATTTATTTACC
AANNNNATAATCAACATGCTCACCTATTAGACTAAATTCACATAATCCACCGAATATATT
TTACTAACTCGTCGAAATCAAAAACACCTAACTAAAACCAACCAAAACGCCCACCGTAAA
ATTAGGTTAAAAGATCACAATCACCTAACTAAATCCAAATTGTTTCAAACTAAATTAAAT
ATAAGTTTATCCACCAATATAATAATCATCATGCTCATCTACTAAACCTAAAATCTCATA
ATCCACCAAACATCTCTGATTATCATCTCAAGACACAATCACCTAACTAAATCCAACTAA
AATCTCATAAATCACAAAAAAAATAGTTCAATATCACAATCACCTAACTAAATCCATATT
GTTCAAGATCAATTAATCCACCAAACATTTTTGACTATCTCCTCAAGATCACAATCACCT
AAATCCATTGAAAATCTCCTAGTCCAACATGCAATTTGTTCAAGATCACAATCGCCTAAG
TAAATCCAAATTGTTCCTTGTTTACTAAAGAAGTCGCTACTTTCTTGGAGATTGAGGTTT
CTTCTCTCTAATGGCTTCTTCATTTCCTAAGAAAAGCATATCTAGGATCTTCTTACGCAT
GCTGCTTTGATGAGCACACTGTTGAGACTCCTATGAAGCTCAACATCCACTTTTGTGTCC
ACCTCCGCTCCTTGTAAATCTGGATGTGTATCCGTTGCCTGGTGGCGGGTTGCTATGTGT
GCTGTCTTGACCCCACATCCCGTGTCCGCTTGCTGGTCGACACCGTAACCGCACGCTCAA
GCACCACCAATGGCGAGCAAGAGCTTGGACAATTGGCGCATACCTGGATTTTATACACGG
GACGCGCCCGAGAACACGGCGCTACCTATCGTCAAGGCCAAGGGCGCACAGTAGGAGAA