morexGenes - Barley RNA-seq Database

Contig contig_20174

Source Contig contig_20174

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_20174 (452 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_20174

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_29571	1	430 bp	MLOC_29571.1	Available	Available	LOC_Os08g04540.1, FRAME:+1, EVALUE:1e-85, 13108.m00435 protein decarboxylase, putative, expressed

CDS Structure of MLOC_29571

Contig Sequence (452 bp)

>contig_20174 452 assembly3_WGSMorex_rbca.fasta
ACCAGTGAGGCAATGCTTGTCACGCTTGTCGCCGCCCGTGACGCGGCACTGCGTCGAAGC
GGCTCAGTTGGCGTGTCCCATATACCACGCCTGGCTGTCTATGCTGCCGACCAAACGCAC
TCCACATTCTTCAAGGCATGTCGCCTAGCTGGCTTCGACCCCGCCAACATCCGCTCCATC
CCTACCGGGCCCGAAACTAACTACGGGCTCGACCCAGCCAAGCTTCTCGAGGTAATGCAA
GCTGATGCCGACGCCGGTCTCGTGCCAACATATGTCTGTGCCACGGTGGGCACCACGTCT
TCCAACGCCGTTGACCCTGTGGGCGCCATCGCCGACGTTGCCGCCATGTTCAATGCATGG
GTGCATGTCGATGCTGCCTATGCTGGCAGTGCTTGTATCTGCCCGGAGTTTCGCCATCAT
ATTGACGGCGTCGAGCGCGTGGACTCCATTAG