Contig Data
morexGenes
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Map Locations of contig_201508 (2973 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_201508

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_29544 1 208 bp MLOC_29544.1 Available Available None
MLOC_29543 1 242 bp MLOC_29543.1 Available Available LOC_Os06g49160.1, FRAME:+1, EVALUE:4e-22, 13106.m05248 protein thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed
MLOC_29542 1 108 bp AK369543 Not available Available None
MLOC_29545 1 160 bp MLOC_29545.1 Available Available None





CDS Structure of MLOC_29544






CDS Structure of MLOC_29543






CDS Structure of MLOC_29542






CDS Structure of MLOC_29545






Contig Sequence (2973 bp)

>contig_201508 2973 assembly3_WGSMorex_rbca.fasta
GTCGTCGATATGGGCGCATCTAGCCAGGGAGGGCTTGCCCCTCTTTCATGGCTCCTTCGC
ACGAAGCTAATTAGTATGGTGCCCATGGTCACCGAGGCGTGGGCGCTCGCTGGGTGCGGC
GGGGTGGCGGCGTGCAAGCCGGCCGCGGCGGCGCAGGAGGTGCCCGCGCTGCTGCATCCT
GTCGCCAAGAAACCCATCTCGTTGAGAAGGGTGGCCGAGGCAAGGAGCGCAGGCCAGGAC
GCCGCTGTCGTCGTCGGGAGGCGCCGCGGCATCGTGTCGTGCCTGCTGGTCATGCTCGCA
CTCGCCGGTGCGTCCTCCTCGGGCGGCGCCGCGCGGGCCGCCATCCTGGAGGCCGATGAC
GATCTGGAGCTGCTGGAGCACGTCAAGGAGGACAAGAAGAAGCGGCTCCAGAAGCAGGTG
ATCATCAGCTCCTCCGCCGCCGAGACAGGTCGGCCAGCTTGATCGATCAGCTTAAAGCCT
TAAACTAGCCATGCCTTGTAGCAGTGCCTATCTGCAATGCTTTGCAAACTAGTGCTGACA
ATTAATCCTTATCCAAAGGGTACTTGCAGGACCTGATGTACAAGCTAAGCAAGGTGGGGC
AGGCCATTGACAAGGACGACCTCGCCGCCGCCAGCGATGTCCTCGGCCCCGGCTCCGACG
CACCGTCAGTGCAGAACGTCAATGCAGCTTTCTCCAAGGCAACACCCTTGTAACAAAAGC
AGAGATACTTACACTTACACACATAACTGTTTGACTGATTTCTATCACTGTATGTGCGCA
ACAGTTCAGCTCAAGTAGTGAGGAGAAGAGTGTGGTCAACAGCTTCTACTGCTCCTTGTC
CTCCTTGTTCACATTAAGTATATATATACTTCATCAGTTTAGCTCTAGCACTGCAAGAAT
TAGGAAAAGGGGTCCTGAACATCATCTCCGATCCCTCAAAAACATTTCCACTTTCTATTT
CCATTCTTGTTGCAGTGAGAAAGAGCGACATCAACTCCTCCAAGTCGGCGTTCTTGTCGT
CGGCCACGGCGCTGGAGAAATGGGTGGAGCTGGCCGGGCTCACCGATAAGCTCAAATGCT
TCTGAATTTTCTGACATGAGTGAATTATTGGTTCACGAGTACATACCTACCGGAGATGAT
GTTTTCCTCCTGTGCACAAAACTTTGTTTTACGAATTAGTAACAAAGCTTCCAAAATGCA
TAGCTAATTATTATTTGTCCTTTACTTGATCTGCTACTGTCCAGAGCAATGGGAAAGATC
TGATATGTACAAGCTCCTGCTGCAGCAGGTGGACAAGGAAGCCCTCATCCCCATGGCTGC
TACTGCTTCACGCGAATAAGTCTTTTGTTAGTGGTAGAAGTTGGAAAGGAAATGAAAGGA
AACCAAGTCAGTATTTCCATGGTAAATTTGGGAGCTATCGATTAGAAGTTCTCTTGATTG
TTGCCTGCTGCTGTTGTTATTTCCCAGTCACTCTTTTGTTAGTGGTAGAAGCTCTTTTGA
TTGTTTCCTGCTGCTGTTGCTATTGAATATCGGAACTATCGATCGAGAGTCGCGTCATGT
TCCACGTGTTTGGATTTGGACGTGGTAGGGACCCTAGTAGGCGTATTCACAGTTTCACAC
ACGACAATGGTACAAAAGAGTTGACATCTAGGATTGGACCTTTAGGTGAGAATCGTATGA
GCAATTTATACAAAAAAATAGTGATACGTTTTACGTGTGGGTATGTGCATATAAAAAATA
CTTCATTCAACAAAAAATGCTCTATGGTAAGATAAATAAAAAAAGGATAAGTTCCGCGTT
TGAATTGATCTCCGCCATCTACCGACCCCACCTTCTCCTTCTCGGCCTAGGCCCCGGATC
CACACTCGAGCAGCTGAGGCATCTGATTTGGCTGTGTCTGTGTGAAGGCGTGTGTGCAAG
GAGAATCTGCTCTCATCTGGTGAGGATGCCAACCTAACCACCTACAAGCCCCACCTGTTG
CTAACCTAGATTCATTTCTTCACTGATTTGCTGCTAAAGTAAAAAGGCTAAATTAAGGCA
GCGACGTCTTGGTGTTAGAGTTTGTTTATCGGCATCTTGTCGGGTAGTTAAACACATCAA
ACCAAGTTCAAGTGTATGGGTATGTATGTTGCTTCTTCTTTTCGTTTGGTTCGTAGCATA
GATTTCGATAACAGGGCACTATAGACACTTAATTCATGTTGTGTACATGCTAGATAGCTA
AAAGCTAAGTTTTGTCTAAATTTTCTTTAGCTTAACTTGTGCAACTTTCATGGTTTGAAC
AAGCTGGGACCATTCCACATGCTAACTTGCTTGTGATTAACAAAGATGAAATCATTTGCA
TGATTTGATTCTAAGCTAAGTTGTAGCTGGTATGAGATCAATTGCATTTGCATGTATGGA
GGCAGATAAAAGCTAATGGCAAGCTACCTACTACATCTTCTCCCCTCCCAGTGGTCGTAC
GTGGTGAGCTCTCGCATTTTGGTTGAATTTGTATGTGCTTTCCTTTGTTTGCTTGCCCTG
CTCGATTACTCATCATGGTGGAATTCATAAATTGATGACTTATTTCATTTCTCAACAAAA
CAAAACAAAACACACGACATTAGCAAGTTAGTGTACTATTTGAATAAATTGAAACGGCCA
TCATTTTTTGATAAATTACGGCGTTAATCCCATCAAGTGGTATGGGCATTTCCTTTTTCT
GTTTCTGACTGAATCTGGTTCATGGTTAAACACCCACACATTAATCTATCCAACATCTGT
GCAGGGGACCTGCTGCAGCGCGTGTGCAGCACCGCTGAGCTCAAGATCTACTTTGAGAGC
ATCCTCGACACCAGCAGCAAGAAACCCCCTCCTCAACGCGTCCGTCCCGGACGAGCCCTC
TTTAACACATGATGTGGAGGAGCAGGCCACCATCCCTCTTCACACCTGCCTCCTCTCTCC
TCCAGCACATGGAGGGGATAACTGATGGCTACT