morexGenes - Barley RNA-seq Database

Contig contig_201301

Source Contig contig_201301

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_201301 (2618 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_201301

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_29521	2	715 bp	MLOC_29521.1	Available	Available	LOC_Os12g44160.3, FRAME:-2, EVALUE:2e-20, 13112.m04664 protein oxidoreductase, putative, expressed

CDS Structure of MLOC_29521

Contig Sequence (2618 bp)

>contig_201301 2618 assembly3_WGSMorex_rbca.fasta
ACCGAAGCACCGACTCCGCACAGCAGTGACACCGTACCCGAGCCCCTCGAGCAACCTTCC
CCCGCTAGTTGATGAAATTTACGAGGAAAGATGGAATCTTTGACGACCATGGAGGAAATC
CCCGGAAGAAGAAGGCAGCAAATCCGAGAAGGAGGCATGAAATCGGAGGTGAGGAAGAAA
TGAATCTTGTAGGGCGACCTGCGAACCTTGTAGGATCTTACTCGACAACAAAATTGTCGC
TATAACACTACGACAATACAATTAGTCGATGTGAATGTTGGTTATCTCTGCTTGTTTTTT
AGCTACTCCTACAATACTGCTACACTCTCACAAGTTCTTACAAAGTTTTTCGGCCAATGA
GAATCCTTGAATCACTGCATTTACTTATGATCCTTGCAGTTGCAAACAGGCCTACTCTTC
TTTGAGGATGTTGGTTGATGCCAATGTGCCTATGCTTGTCCCAGCTATGTACCCACCAGT
CCATGCATTCTCTGGAAAGCAAACAACAAGTGCTGAATTGAAGCCCTTTTCGTTCTCACC
TCAAAAGTTTTCACTCATCAACTGTTCCCCTGGAAGTGATATAATCTGAAATTTATAATC
ATTACCTGAAAGTTGAATCCGCCGGTAACCCCGTCGACATTAAGAACCTACAGCAACATC
ACACACTCTGTAAGACACTAAGATGGCCAGAGTGTTGCAAGTTCACGAACAACTGTGCTA
TTACGGTATTACCTCTCTGGCAAAGAACAGATTGGGCTGCTTCTTGCTTTCCATAGTGCT
AAGCGATATCTTTACAACAGATGAACAAGTTAGATTTTCTTTGCGAGTCGGGTCATGTTT
ATGAAAACTGCAATTAAGTTGTCGACTAATAAATACCTCTGAAAGTGGAACACCTCCAGC
CGTCACGAACTCATCTTTGAATTGACCCTACATATGATGAGGAACAACAACACAGTGAGT
AAACACGTATCGCATCGCTGGTGAAATTTTCAAGTGATGCGCTCAGATACCATATACCTT
CCCAACAACCTCAAACATCCAGTGTTTTAACCGAAGGGCTGTTGCATTTAGATGATTTTT
TGGTACGGTGGCCCAGTGCATATCACCATTTATACTCTGCAAGAGGAGACTTCAAATTAG
CAAAGCTTTCTGATTAAAGGGATAAAGACAGAATTCAGCAATATCAGAAACCTCCTGTTC
TTGAAGGAATCCCCAAAACCTCTTCACGAGACCAAACTCCTTGGGAAAGGAGTTATTTAC
TTTGCTCTTATGCAGAGATTACAAAAAAAACTTAGTTCAGCTTCACCATAAACATTTTAC
AAGGGAAATTTGGAATTTTCACAGGGAATACTTCTGTAAAAAATTACATATGCCATACAA
AACATTGGTTAGAGTACTGTAACATCATGGATAAAACAGAGTGATGTCAAGGTGGCTATA
AGTAACTGTATCTGCAATCGAATCTCCATTAAAATTGAACTCGGAAAGCCTAATAAGGGT
GGCATAAAGCAACAGGTAATCAAGAGCAGAGTTAACATTTAGAAACTAAGATTCTCAGAA
GAAGACTCCAAAGTTACAATAGAAATGCACAGGAAAAGGTCAGAACCGCATTTTTGTATT
TGTGCTGGAAAAGGATGCGCTTCATGTCCTCAGTGTGAATGTCAGGTATGAAGTCAACCA
TAAGCTTTGCTGTGTCAAAAGAATGTACAGATCCCAAGAAAAGCAGATGAGTTTGGCAAT
TGGTTGCGTTGGATGACAATGTTAGAAATGTAGTGTCACTCTTGCACAATTTCTTCAGAT
CTCATCTTGGTACTTGTCCTAATATAATTTGCGTGCTCCCCATGCAGACAATCGAAGAAC
AACAGGGCCACTAAGCCCCGAGTGTGTAACCAACATAGGTCCAGTCTTTAATGGCCAAGC
AATTAAATAAGCAAACATCTACGATGGAGCATGTTGCCGAAGGTGGGCCGCTCACCTGAG
TTAATTGAGGAGAACTTTTCTGAATGCCATCCAGCATCAATTTTGCTTTGACTCTTGTGA
AAGTAAACTATATGGCAGAAGAAAAGGATGGGGATAATTTCTGTCTAGTCAGTCACTCGT
GAGCATGAGATTTGTAATAGTGGTTATCGATGAATACTCCGAAGAGATCACACAGTCGCT
TGTCTGCAATTTTAAACGTGAATAAGCTGGGCACTGCCGGAATAATCGAGTGACCATGTT
GGGCAGCAAGTGAGTAACCCTGCAAGTAAGAGAAAATATAAGGGAGGAAGCTTATGGTGC
CTACTGTGATGACCACCGCAAGCATCTATTCACATACCTGTTGGCTGCTGCGTGTAGCAA
CCAAGACATAATTAGCGCTCATGTAATCAACAAAATCAACAGTACACTTCTCAACTTCGA
CAACAAACTTCCCGTTAGCGTCGACGGATGCACCGGACACTGATTTACCAGCCTGCAGGG
AAACTTCAAAAGGAACTCAATTCCAGAAAATTGTTTACTCACACTGAAGGGTGTGTGGAT
GATACTTAATGGACAACAGAGAGCTTAACAACATTAGCTACCTCCGAGTCTTCTAGCCTC
GTTCAGCAGGCTGTCTACTACCGACGCGGAGGAATATG