Contig Data
morexGenes
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Map Locations of contig_200799 (5587 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_200799

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_29459 5 3937 bp MLOC_29459.2 Available Available LOC_Os07g15270.1, FRAME:-1, EVALUE:5e-121, 13107.m01600 protein RNA-binding region RNP-1, putative, expressed





CDS Structure of MLOC_29459






Contig Sequence (5587 bp)

>contig_200799 5587 assembly3_WGSMorex_rbca.fasta
ACCATGGCCTGTAGGGCGTGCACACACGCAGGATGTGTAAGTGAAAGTTTTTTTGTCAAG
GGTGGCATAGCAATTTGTTTTAGCTTTTTTTTTTGGCTTCAAGAAGATCTGATTGTGTTT
ATTAACTAATGCTTTACATTGACTTTCTGCAATCCCATCTGATGACTGTTCCAAGCGACC
AGAGAATCACAATATCTACAAAAGGTCTTCATCTCTCTCTTCGATCAGATCCAGTTGTAG
AACCAATATTGAGCCCATGTTGTATAATTCATTATTTTTCTGATGACATATCCAACAGTT
CTTACTTGCCGGGCTTGCACCCATCAAAAGTATACTGCTATCCCACTGATACAGTTGTAA
AAGTCAATGATTTAGAGTTTGAACGATTTGGTTATCGAGGCCAGTAATATGAGACTTTTG
GATGACAGTCTCATCAACAAGGTTCCCTACGTAGAGTACGTACTGATACTACTACCACGG
CCAGGCTCTTCTCTAATGATACTCAAAATGTGTTGGATCTATTGGACCTGCATGAAACTG
CTTGATAAACAAAAACTTCCGGTCAACTCCTCAACAAAATAAACAACAGAAATGGCATGC
CGGCTCCCCACAGGCACGCCTCCGCCCACTAGTACCTTTGAAAATCTGCTAAGAAGCCCT
TAAAATGGAGATTTGTTGCTGTAACACGATCAAAAGAACCAAAAAGATCATAATGATTAT
AACTTTCTATATGACGCAGAGCATGAAAATAAACTTTATAATGTCAGTAAATTGACTACT
TCCTGAGGACAAGTTCCCCAGAACCAATACAAGCTAGGAGCCAGGCCCCCACGTTCAAGT
ATGCGATATCGACGCCATCCGTTTCACAAAATGAACCTGTCACAGTTCAACCACAACTCT
CAGATTCTCAGGTTAAATCACACTTCAACCAGATGGTACAGGCACTTACGAGATCAGTAC
CAACGTTGTGCAAAAAGAGTACCGTTAATATTCAGCCATTTTCAGCACACATCGTTCCAA
TTGACGGTATAAATTTTAGAAATGTAGTTTGTCATGCCAGATAGAATGACACTGTCCATG
GTCTCCAACATCTTGCGATTGCAGTTCAGATTCTCCTGCTGCTGCGCTGCTAGTGATTTC
TCCTCCTCTAGTTCATGCTACAAGGTCCAAAAAACAACAAACGTCAGAGAATGCTTGCAT
AACTCCACTAATTAGTAAGTAATCTGCAAATAAAGCACAGAACAGGAACACACATGTGAA
AGATGATTGCCATTGAATTTCAGAACTGAGGGTCTACAAAATGGATTTTACCTCAATTAG
TGCAAAGTTCTCCACCTCATGTCTCCTGGAGAGTATCTTTGATTTTTTTAGAATCTCATA
ATCAGGATCTCTGTGGCCCACCCAGCGAAATTTTAACTTACTCCCAGGTCTCCGGGGGCG
ATCATTGAACATCTCAGCCGTAGCATGCTTCGCCCTAACAGGCCTTGGAATTCCAGAGAT
CATAAAAGGGAAGTCATGCAGCATACTGACCACAACTTCAGCATCCTTCTCAGTTTCCAT
CTCTACTAAAGCAGATTGAGGAATATTGTAGGGAATGGTGTAGTTCACAACAAAACTAAC
CTTTCTGATACTGCAAAATTGACCTAAAGCTGTTTTTATGACTGCCTCTGTAGCCCGGTG
GGACAAGTTGTCAAGGTATACAGTTCGTTTGACCTTCTCCTCGAACTCTTGATACCGTTT
TATGGCTTCCAACTCTGCAGCACTCTTACTTTGATTAACAGCCTGGCCATCAGAAGTGGA
AAGCCTCATTTCAGATGTATTCTGGCTGGTGCCGGTAGCCTGCACTGCAGAGGTGCGCGG
CTTCTTGCGTGGGGTGATTTTCTTAGCTGGATCAGTTGATCTTTTGCTTGGCGCCTTGTT
TCTAGCCACATCAGACTGCTTCTTGGTGGGAATGGTGTGGTTAGCATGTTCAAACACATC
ACACTTTATAGCAGTGGTTGACAGGGTCTTGCTTGGGTTGCTCTTAGCCTCTGTAGCTTT
GCGACTGACGTTGTCAAGACATGCAGTTTCCTTGATCTTCTCCTCCAACTCTTGGTGCTC
CTTTATGACCTCCATATTTGCAGCACTGGTACTTTGCTCCACAGCCTTGTCAACAGAAGC
AGAAAGCTTCATTCCAGGGGTCTTCCTGCTGGCACCAGTAGCTTGTACTGAAGAGGTACA
CGAACTCTTGCATGGGGCCTTTTTCTTAGCTCGATAAGTTGGTCTATTGCTTGGGCCATT
GTTTTTAGCTTCACCAGACAGCATCTTGCTGGGAATGGGATGATTAGCTTCTTTCAACAC
CTCCTTAGGCGTCACAGCAGTGATTGTTTGATTCCTGCTTGGGTAGTTACCCTCTTCAGC
TGCTACTTCACTGTCAGTATTGCAGAGCAATTTCTTTCTCGGGGAGTTGCTATGTTCCTC
CTCACCCTGCTTTCTAGTCGTTGTAAGGCTCTTTCTTGGGGAGTTGATATGATCTTTAGG
CAAATCCTGAAGTTGAAGACGAAGCATCATGCTCGAGATGTTGTTCACCTCTTCACACAA
TCCATGTTTAGCAGGGTAACTGCTTGGATCACTTCCTTGCTCTTCAGCAGCGGTTCTCAG
GTTCATGCTCAGGGTATTGACATTTGCCTCATCCAGTAGTTTGTTGCCTGAGGTATCGCT
CTCAGATTCAGCAGACAGTGTCTTGCTAAGGGCGTTGTTATTGACCCCATTACAGTGTCC
CACTCTTGGGGAGTGGCTGCTTGCCTCACCATGTGCTGGAGTGGTAATCAGATTCTTGCC
TGGGTTGTCAGTAATCAGTTTGTTGTCCTCAGGATACTGTTTCATGGCTTCCAACTCTGC
AGCACTCTTACTTTGGTTAACAGCGTGGCCATCAGAAGTGGAAAGCTTCATTCCAGATGT
ATTCTGGCTGGTGCGGGTAGCCTGCACTGCAGAGGTGCGCGGCTTCTTGCGTGGGGTGAT
TTTCTTAGCTAGATCAGTTGATCTATTGCTTGGGGCCTTGTTTCTAGCCGCATCAGAAAG
CTTCTTGTTGGGAATGGTGGGGTTAGCATTTTCAAACATCTCACGCTCTATAGCAGTGGT
TGACAGGGTCCTGTTTGGGTTGCTCTTAACCTCTGTAGCTTGGTGAGAGAGGTTGTCAAG
ATTGACAAGAAATACAGTTCGCTTGATCTTCTCCTCAAACTCTTGATACTCCTTTGTGAC
CTCCGTGTTTGCAGCATTGGTATTTTGCTCCACAGCCTGGCAAACGGAAGCAGAAAGCTT
CATATCCGGGGTGCTCCGACTGGTACCAGTAGCCTGTACTGAAGAGGTAGGCAGCCTCTT
GTGTGGAGAAATTTGTTTGGCTGGATCAGTTGGTGAATTGCTTGGGCCATTGCTTTCGAG
CTTCTTGGTGGGAATGGGGTGGCGAGCTTCTTCAACCACATCCTCGTACTTTGCAGCGGT
GATTGTCAGATTCCCGCTTCTGTTGTTACCCTCTTCATCTTCTTCTTTGTTGTCAGTATC
ATAGCACAGTTTCCTTCTTGAGGAGTTGTTGTGTTCCTCATCATCCTGCATTCTGGGGGT
TATATCGTTCTTGCTTGGGCTGTTGCCTATATGATCTTCAGGTAATTCCTGAACTGGTAG
AGGAAGTATCATGCTCAAGATATTGTTGTTGGCCTCTTCACACGGTCCCTGTTTAGCAGC
ATGGCAGTTTGCATCGCTTGCTTGCTCTTCATCATCTACTCTTAGGTTCTTGCTCAGGGT
GCTGTAAGTTGCCTCATCTGGGTGGTTGTGGCCTGAGGTATCGCTCTCAGATTCAGCAGG
CAGTGTCTTGCTCAGGGTGTTGCTACTGTTCTCATTACACAGTCCCATTCTTGGGGAGTG
GCTGCTTGCCTCACCCTGTACTGGAGTAGTTATCAGATTCTTGCCTGGTCGAGGAAGTAT
CATGCTCAAGATATTGTTGTTGGCCTCTTCATACGGTCCTTGTTTAGCAGCATCACAGTT
TGCATCACTTCCTTGCTCTTCATCATCAACTCTTAGGTTCTTGCTCAGGGTGCTGAAAGT
TGCCTCATCTGGTTGTTTGTGGCCTGAGGTGTCGCTCTCAGGTTCAGCAGACAGTGTCTT
GCTCAGGGTATTGCTACCGCCCTCATTACACAGTCCCATTGTTGGGGAGTGGCTGCTTGC
ATCACCCTGTACTGGAGCAGTTATCAGATTCTTGCCTGGGCTGTCAGTACTCATTTCAGG
TACTTCATTACCCCTGGTTTTGTTAATCCTAGGTACTTTCTTGCTCAGGGTGAGGGAGGC
ATCAGGTAACTTCTTCCTGGGTGGTAAACGTATACGTATGATGTTCCACGGACGGTCTGC
TTTCGTATCATCAGTTTCGTTGCTGATATCAGCAGCCTGGTTTTCTGAGGCAGACATCCC
TTGACACACGACACACGCAAAAATCCTGCAGGTTGTGAATCAAATGGCATGATGAGAATG
AATAAGAAAAGTGCTTATAACATCATATGCTGACCATTAGAAATAGAAATTCATTTGAGA
GAAGAACATCACATGCTGAAGTTAATAAGGTCCCAGTTGGTTCACCAAATTTAGCATAAT
GTCAGACTTAATTCACGCTACAATGTAACTGGCCTAACATAGTACTCCCTCTGCATAGAT
GTAGCCTTGGTTTGCAAACAAACTGCATTAAAACGTCCATGCTAGATGCTAGCCATAGAC
CAAATCCTAGATGCTTCCAACAGTGTCCCTAAATCAATTTGGTGACCTGACACATCTTAC
ACAAACACAGAAACGCGGATTCATCATTTCACAGAAAATGCTGACACAAGCTGCGGTTAT
ATATACACAATAAATACATAAGAATGCATATACAATAATATATTTTCAAGTATGTGCTTA
TGCTAAACGAAGATACAATGAGCCAAAAACATAGAAATTGATCCTTAAACAATCCAGAAG
GAGGAGAGGAGAAGGAACTGAACAGGGTATGATGGGCAAACCCCAGGCCAGAAGCTATGT
GCTTATAAGTTATAACTATCCAAAAACATCTCTTGTGAAAGCATACAAACATATGGCCCG
GTTGCACAATAAAAATGTAGAATTTGAACTCAATTTTAACGATCCAATAAGTTAGATAAA
AGTCGAAGAAAACTACAAAAGTTAATACAAAAGAGCACAAAATCGATAGTTTGGTTCATC
TGCTCCTCCCACAACATCAACTGAGATAGTTAATCACTGAACCAACACCTTCAAGGCATG
AAAACATGGGAACATTTCTTCATCTTCTGTTCTAAACATGAAACTGGTGATAAAATGCAT
CAGTTTGAGGATTCAATTCAGCGCATGTACAAAAGAAAAATTAGAAATTATACCTAACAC
AACACACGTACAGACAGCCACACGTCTGCGCTTAGAAGTGGGGCGAGCAGCGAACTCGAT
CAGCAGCTTCGCTCGGCGGCGCACCACCAGAGGGTGGAAGAGGGTCCGGCGGTCTGGCTC
GGAGGGGGGTGAGGGGAACGACGCGTCACAGCCGGTAGCCCGAAGGGAGAGGGGGGGGGG
GGGCGGG