morexGenes - Barley RNA-seq Database

Contig contig_199365

Source Contig contig_199365

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_199365 (2673 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_199365

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_29304	1	1034 bp	MLOC_29304.1	Available	Available	None
MLOC_29305	1	533 bp	AK365257	Not available	Available	None

CDS Structure of MLOC_29304

CDS Structure of MLOC_29305

Contig Sequence (2673 bp)

>contig_199365 2673 assembly3_WGSMorex_rbca.fasta
TGTCTGCCATGTCTCTGTCTGTGTTCGTGCAGATAGGTGCATAGAACGCCAGCATGATAG
TTCACCTGGCCAAAGAACTTGTACATGCATGCGCATCATCGCCTGACCTTTGGGATTTTC
ATGTGCACACAAAGATGAAAACTTAATTGGTCGTTATGGCTAGGTACAACCTATAGAAAA
CTATATTTAATTCCGGCTGATATCCAGATGTATAGTATTTGAACAGCAAGTCCACGTCGC
AATCGTTTCCTATTGCTTTTTTAATTATTCAGAACTTTTCATGTCCGTGGTTTCTTTTAG
CCTGAACGTATTTGTTGTAACATCTTTTTGCCTTCTTTTTTCTTCGGGACTCTGCACGTT
AACGTTTCTTTTGTACGTACAATTTTGTGTAAGATCCTATCAAAGTTCTTTCCTTATTTA
GTCCTAACCGTAAATTCCAGATCCGACAGCTTAATTAGTCTTGATAATGTGGATTAACAT
GGAGGCTCGTATGATGCATCCAATTAGTAAATATAACATATAAGATAAGATAGAAGATAT
AAGATGTGCACTGCTAGGAAGGCAGATTGTGACAGGGGCTACCACTTGCGTGTTGCGGTA
CAAAGCAGTGGACAGCAAGGATATCAGCTTCAGGACCATATCAGCATTATATTCCTGGTG
TTGGAACACAAGACTCTTCTGCCCCATCTATTGGGTAACTGACAGTGTCCACACATCTTC
CAGTTCGAGACATGGCAATGTCAGTGTTATTGAAATTTCCACACGAGTGACATTTGACAG
GACAAGAGTCGACTATGCAGTCACTAGAACACGGCATGGGGTTCCATCAAATAAGACTTG
GAAATATGTTGAATTATTATCATGAGAGCATGGTCATATGCTTCTGGAAACCCAATCTTG
ATTTATGTTGTTGTAAATTAAAGACCTCCGTCAATGAATTTGCGATTGAATGTTATTTCT
TGGGGGGTCTTATTTGTTGCACTGGAAATGGAATGTATGTAAGTTAGCTTCCAAGTAATG
TTGATTGAATGTTCATCCAATAATGCAAAGTTCATCTGTTTTTCTGAGAAAAGGAACACA
AAGTTATCTAAACAAATATTTGTTTCTACAATAAGGAATAGAGGTGCTCTTTTTCTCATC
TGTCCCATCACAGGGGGGGAATCCATCCTTCCGAGGAACCAGACGAGTGGTTCTGACATG
TATATCGACCGAAATTTGTATATAAGAGTAAACAAAAAAAATCATATATGTTGAATTTAA
CTGAAATTACTCTGTTGTTTCTGCAATAACAAGTGCAGGACTAGGAAGGCAGTTTGTGAC
AGGGGCTGCGGCTTGCTAGTAGCTTCAGTCTTAGGGTAACATATCACAGGACCACAAGAT
TTTTCTGCCCCATCTACTGGGTAACTCACAGTATCCACCCATTCTTCAGAAATTGCAACT
GTCACTGTTACTAGAATTTCCACACTGTGACGGCACCCCTTGTCGCACACACACACAAGT
ACCGTTTGACAGGACTGGATTGCGCCAAGTCTATGCATCCAATACAACACGGCAGGGAGT
TCAATTAAATCAGAGTTGGAATTATTATTTTTCCTGCCTACGATCGAAGACGACGTGTTA
GAAGATCAGCTGTGGCATGTGGCTCTGTTCTTGAATGTGTTATTTAATTCCATGACCGCG
ACGATTTCTTAGTGGCAAAGAGGGGGAAAAAACTATCTATCTATGTCTTCGTGCACAATC
CTGAAGGTTAGAATATGCGAAACTTCAACAATGCGAATTATGCAGCTGGAAACGCAACCT
GGAATGATGTTGCTGTAAACTAAAACCGCATCTCAATGAATTTGTGATGAAATTGGAGAC
CAATGGTTTTATGGGTCTTTCATATGCAAAAGAAAAGAAAATGCATGCAAGCTAGCTTCT
CAGTGGCAATCTTCATCCACTAACTGTATGTTCTGTGAAAATGTTTCTCAACAAGAAAAA
GGCAGCCTTTTGTCACCTCTCATAGACTTATTTGTATCAAGAATTTACTATTCAAGTAAT
ATTTTTCATCATAATTTATCAAGAGTAATGAACAAACAAATAGATGGATGTAAGATTTCA
TACTTATTTGATGAAGTTGCTCCGCACAGCAAGCAAGGCAGTTTGTACAAAGCATCTATA
CTGGGTTGGTATTGTTACAACAATAACTTTTACAGATAAGTGCATCACTCCAGGATACAT
ACATATACACATACATACATACATACATAATAAGTTAATACCACATATTGTATCTATACC
TCACACATCGTCTTCCTCTGACACCACACTCAATCCCTCCTCCGAGACCGCCGTCAGCTC
GGAGGTGAAATGGTAAGAGTCCTCCACATGGATGTGTCCTTCGTCACAAAAAAACGGCCT
TGAAGGCATCTGTAGGTCATCAACCCCAGCCTCCAGAATCTCAATGACCTCGCTCATCGT
TGGCCGATCACGAGACCTCATCTGAATACACCATAATCCGACAACACACAGCTTCTTCTC
CAGCTCGTGCATGTCGGCAACAACTGGAGATATCTCACCCGCTTCTTCCCGAGTCAGCTG
GTCGTACACCCATGACGGATAGTACGCCTGACTTGAGGACCCCATGTTTGGATCAGCGTT
CCTTCTACCGCCAGCCATCTCCAGCAGCAGCAT