morexGenes - Barley RNA-seq Database

Contig contig_198118
Source Contig contig_198118
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_198118 (8006 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_198118

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_29166	12	2955 bp	MLOC_29166.4	Available	Available	LOC_Os09g33940.1, FRAME:-3, EVALUE:3e-138, 13109.m03398 protein expressed protein
CDS Structure of MLOC_29166

Contig Sequence (8006 bp)

>contig_198118 8006 assembly3_WGSMorex_rbca.fasta
CGCAGGTTGCTGCCTCTCCGCCGCGTACCATGGCGGTCCGGGAGGGGGGTAACCGCTTCA
ATCGCAGTGATGGAGGCGGGGAAGGAAGATTTGGGCGCGGAGGAGGGCGATTTTGGCGCG
GAGGAGGTTGCGACCGCGGAAACGGCGGTGGTGGCCGCAACATGGTGTGGTTGCGTGACA
CCGAGGACGGCGGCTCCTCCAACGTCGATCCGCGCCATGGGTCGTCAGACAAGGCGCGAT
GGGACGCAACAGCGGGGGATCAAGGAGGCGCGCGTGGATCCGAGAAGTGGGGCGACAACA
ACAACACCACTACGACCGGTGGAGGCGCAGGCGGTCGGCAAGAGCTTCGTCAAGGTCCAA
ACCAGCTTCAGGATCGCCGTCATCCTACCCCTAGCAAGAGGAACATCTCCCCACTAGTGG
GAGGTGCAGAGGTTTGTGTTACATGCAAGGATACGGGTCATGCATCTGCTTATTGTCCTC
GTGCTATCTGTGGAAGATGTGGAAATCATGGTCATCTTATTACTGTGTGCAATACTTTGC
TCCCTTGGGAATGTGTGGCTCCGATGTGTGGTTTCCGGGCTAGGGGAAAGGGATTTTACT
ATATACATGATCATAGCACCCCTAGTCAAGCCACTGATACATGCTGAAGGTCAATGCATC
ACATATACTACTTCTATGTGGACCACCTACACAGGATTTCAGGGAGGAGAACGATGAAGA
AGATAAGTGGGAAGAATGGTGAGATTTCTGATGAATTGCAAAAAGCGGGTCTGAGGGCGA
TGAAGAAGCTGATGTTGTTGAGTTGCATCTTCGTAGTGTCTTTTTGTTGTGATGACCCCT
GTGTGGTCGATACTCAGTGCTGGTAGTTTCTGGTTGTGCGTTGCCTGGTAGTGTCTGTAT
GCGATACTTGGTGGTACTTTCTTCTTTCTTTGTTCTGGCGAGTTTGGGTGATATTAGGTT
TTCGCCCCATAGTCTTGCGTTCCTGATGACAGGCACAGATGGTGGGTTTCCTGGTATTGC
CCCGAACTCGCTTCTCCCTCTTTCCCTCTATCTGTTTCGGCTGAAAACAATGTATTTCCG
TTATGCTTTATAATGGAAAGGGGAGAAGCCCGGTTCGAAAAAAGAAAAAAAAGCTGGACA
ATTTGTGTTCACCCCCGTAACAAAACAGACATTGCGGCTGCAGAGTCACAGAATTTTCCA
AATAACAGTCTGGGGTTTATCATGACCTTAACAAACAGCCATAATACCGACAACAACACA
AGGAGTCATCTCCTCCTCTGGAAGGTAAAATAGCTAAGACCAGGTACCAACATGAGATTA
TGTTTCACACGAAGTTTGGTTCAAAGTTGTAAGGACTAAATAACAACTCGTTCCATCCAC
CTGCAGTACCGCAATTTAGGAGTTGTAATTTTTGCACCAGGTATCCTACTGTTCTTGCTC
CTCCGCCTTCTTGTGAAGCTCCAGTATCATATTGGCAGCTGCTGAGCACCTCGCCTCGTG
TGCGGTCGGACGAGGGCCGCCAGTGATGCTCATCTCAAACTCGGGGCATGTCAAAAGTAC
ACTGGCGTGGAACATTCCTGAAAAGATAGTTAAAGGGCTAGTGAATAAGTGCTCAGAACA
GGGAGCTATGAGAGGTACGAGATGATAGTCAATCAACTATCAGTTCTGGTTATTGCTAAC
TGGGGACCTAATCAGTCTGATCTGAAATAAAGCCTAAAAGGGTGCACACATGTCTGAGGA
AAGCATTGATCGATCGAACGTTAAACAAACCTAACACATGTGGTAAACAAACAAGTGGCC
TATGTGGATTGCTACATGATACCAAAAGAGAAAACTTGCCAATTGATCTGACACCTTGAA
AACTCTTTTGGTCTAGGCATGGTTAGCACAGTACATTATGTATGTTATGATCACAATGCA
GGAAACGAACCAAGAACTATAGGGGTTGAATTCGATAAACAATAATCAGAAAGTACGTGG
TACAAGACTCATCTGCATGGTATTCCTAATTCGTATGGTTATAGGATCCAAGGACCTAAT
GCTTGTCCATCCAGAAGATCAAAGAGATAAAAGTAAATATTTGTACATACCATCTGATAC
TGAAGGTACTACTGTGTATCTTGGGAATATCCAATTGCCCCCACGGCAGATCTCATCAAG
TTCCTGCACTGACAAGTGTTAAAGGTACAGGTGGCATTTAAAATTCTACTGTAATACATT
AGTTCAGCTTTTGAGGTTTCTTGCCTCGCATGAATTGTGTCGGAGGAGTGCCTCCCTCAA
TCCCTTCCTCTGAGTGATGGATTGGCCACCATCTCCAGAGCAAGATGATTTGGCAAGATC
CATCATATCTGAGCAAGTTTCCTTGTATTTGTGTATTATTGACACAGTTTTTGGTGTCAT
CTTCCCTTCTGCATTAAGTTTTAGAACATGATGAGTACAAGAAGTGTGGACCTGATATAG
AAACAACTTGCCACACTTCTGACGGATGATTTGTACATCACAAAGTGCGGTGGACGATTT
GTTCACAATGAAAAGAACGATACACCACAGTTTATCACAGAACTTTTGGAAACGTATGGC
TCCCAGAAAAACATGCCCATAATGTTGGCCACAAAAGTGTAACAGTTCTACAGCTTGATT
ACAAATGTAAGCATTTCTAAAATGTTAAAAGGGTAGAATACCACTCAAGATTGTCTGAAT
GTCCATATCACACTGAGCACTTCGTTCTTGAAGTATGCATTCCTTGCGAAGCTGAAACAA
AGAGAGAATAGGAGAAAATTATAGTAAAGAGGCATCATTTTTTTTCCTGAATAAAAGAAA
AGACATATAACATACAATATCATCTCGTATTTTCTGAATTGATCGCAGGGAATCATACAT
CTGGTCATTGGTGTACTCGGTGGTGCCGCCTTCAATGAAATTTGGAACACATAGATTAAA
AACTTGGGAGGACCAAGAACCAATAATAGGAAAATTAAGCAGTCTTGGGTAGGTTTACCC
GAACCTGACTTTTCTGACACATCCATATTTTGACGTTCCAAAGCACGGTTCTTTAGATCA
ACATGTGGTGCCTGATAGAACAATTTGGAGGTGTTTGGTTGAGCAATAAAGTAAAACAAA
CAGCAACTTACACATAATGCACTGGTATCGCAAATGGAATAGGGAAAACCAAAATCTGTT
TCCTGGTTATAATGGTTGCCACTATTAGTCAAAAGAACATCACCTGAACACTCCAACTTC
CAAGCACAAGAATTACAATTTGAAAATAAAGATCAGGTGAAGACAATCATTCGTAGGCAT
AGGAATTCCTCAAAATCCAAACCAAGGAGAACAATTGAAAAATCAAACTAAATTTGGGGA
AGAAAACACTCGTTAATTCAGATATAATCCCTTATCATCAGCCATGGACTTTGTCGCTTC
CTTGGCTGTGTACCCCGTGCCAAGAACACCGTCTCCTCATAGGCCTTACATCCTCCTGGA
TGGAGGAAGCAGTCACATCCTCAACGGCTGGATTTGTCGCTTACTTAGTCGCCACATTGA
TCCCCTCACAAACCAGCACCGAACCGATCTCCACTAACACCGAAAAATCTTCTTGCGGGA
GGCTATGCTTCTCCATGAAGGAGGGGATCAATTGGTAAGGTGCTACTGGCCGTCGTGTGG
GGAAGCCTAGGGTGGGAGGAAGGTGCGGCCAGGAGGAAGGAAGGTGTAGGGAGGAGATCT
GCAGGACCCCTCTGGTATCACTTTTGTTACGGTAGATTTTGGGCGTAATCGGCAATGAAT
GGTGTTGTATCCGATTATGTGGTAAACTGGTAACTGAGCCCAACCATATGTAAACCAAAC
GGCCGTAAAGTTTTTGGCTCACGGTGTATGCTAATTACGTGAGGAAATCAGCGAACAAAG
ACCTTCTTAGTTCTTCAAGTTAAAGCAGAGTGGATGAATCACACAAAAAACGTGGCCTAG
TCATCACCTACTCATCTGAAACTGACCCATGAAAAGGATAAATACTTCTTTGGGTCGATT
GACCATGGAGGTTGTGGCTCCTCTCTTTATATCGAGATGATCTATTAGGGTGTGGGTACT
AATAATAAGATCTACCAATTGATACTTTCCTAACAATAAGATATTTTTCGTCACTAATAC
ACCATACTTTATACTAAATGTTATATTATCCCTTATTTGATAGGAATGGACTGCACGGTC
TTCCCCTTTATAAATGTGCTGTCACAATTTTCCAAACATTCACGTGGAGACATGTGATGG
CCAATGAGAAATGCTCTAAGTCTGAGGTACTTATAGACTTATAGTAGAGTGCATATGAGA
ACACAAACAAATAGAATAAAGAGCAACAATCATCACGATAACATTTTTATAGACAAGGAG
GGAACCATACAAATTAATAGTTACAAGGTCAACCTATTTGAAGTTTATTTTCTAGAACCA
TTTTAGGGTGCGTGTGATCCTGATGTATCCTAGTATTGTAGTTTTTCAATACTTTCAAGC
TGTAAATTGGCTTACCTCTACAGGAAAGACATCTTGGGGCACATTGTAACGTCTAGACTG
CTTCTGTGTTTTGTTCTTCTCTACTTGAACAATTAAAGTTGATTGTATAAGAACACAAAT
AAGGAACAATGTGATCGGTAAATTCAAAATACAGTTAAAGTGACTAACCGGCTTGTAGGA
TTTTAGTTTCTCGACTTGCTGCAGCTGCAGCTTTTGTATTTCTTGACTTAGTCAGGGGTT
TTGAAGTTTCCACATCAATAATAACAGGAGGTGGACCATTTTCTATTGTGTGCATCTCAC
CATCTGGATCCTCTGCACAGACATCAGCCCTGGAGGCTTCAGATTTTCTTTTGCTGTTTC
TTTTGTGCTTGCTGGTCCTGTAGTCCTGGTTGCTATTGGCACCAATTGCTTGTTTGCTTT
GCTTTGGAGTTGACACTCTTGTAACTGGTTTTTGCATCTTAGACGTGCTATTCACATCTT
GCTCTTCCACATTTTCATCTATTACAGAGTGCAATGAACCTTTTCCATGTCGATGTGATT
GTTCGTTTAGTGGAGAATCAGAAGGCCATTTCCTGAAACATGTGAAGTGTTATATTTACC
ATCATTACCCAAAAGGTTCCATTGCCCTACTATCATGCATAAATAACCTAGAACAAATCA
TATGTTACCTGTGGAGGAGTTCAAACAAAATCTCCTTATAAGGAAGAATGTGATAATACT
CAACTACAGATGTTGTTTTTGGAAATGGATCATTTGCAAATAGCGGACCAGTCATACTGT
GAAAGAGGAAAACCAAAAATGTCAGTACCGTTGAGAAAGAGTATTGCTTTCCATCAAGAT
GAACCATACAATGGTCCTATTCGATAAATTGACTAGCGGTTGATCAAAAGGGATCTAACT
TAAAATCATAAAATTATCTAGTAGGTAAACGGAAACCTGCTAATCAACTCTTCTAGACAC
ATTTCCACAAGGTTGCTGTTCACGGTTTGCTCATACTCCAAAATAAATAACTTGGTAGTC
GTCCTTTCTTTACTCAACGAGTATGCCAAAGTTTCATCGAGAAGACGCAAGTTTGAGCCC
TTCATTCCTATTAAGACCATAAATTTACCATAGTGAGCAGCAAACAATGCATAGGTGGAT
CAAACAGAAAATAAACATAATATTAACAAAATCAAGTTCATAAATTACACTTTTTGAACT
ATTATATGTATAGAACCAAATAAATAGCGGTCTCTAGCAAACAATTTGTGGCTATCAGGT
CATGTACAAGGGAATCAACCATTATAGTGTCCCAAGTTATTTTCAATCTGCAAGTTGATG
AAATTAAATCAAGTTTCAGTAACTCACAGCTTGTACACAACCAAAACAAATGAGACGAAC
AATGTAGCGGCAAAGAATTTAACTTATTATATTTGCTGACGTTCTTGTTTGTTCCGAATA
TAAATGGTTTTACACTAGTCAAAAACAAGACAGAGGTACATTTTTGGGTACATTCTGGGA
CCATGCACTTATTCTTGTTTGATGTAAAGGAAGTGTACAAGTCAAACTCATTTTTTGGCT
TCATTGGCAGTTTAAATTTAGGACCATTTGCAACAGTAACTTATGTAAATACTTATTTAC
CAGAAACTCTGATCAACATTCCGTACTAATAGTCACCAGATCCAAGTGAGGAAACTACAG
AGACATGGCTCTGTAGACACAAAGGTTGCACACTTTATCTCAATGCTCTAGGATGAAAAT
TTAAGAGTTGACAGTTTAATATCGGATAGAAGCAATACCTTGCCAACTCAAAAGACGAAA
ATAAAATGACATATATCGATATATAAAATTACGGGCTGTAATTATAAAATCTGACCTGTT
CTACGTTCCACCTCTGAATAGGCTTGTTGATGAAGCATATATGGTGTATTCAGAGCACCC
AAGTTTCCTTTACCTGTTGATTCCTGGCCTGCTGGCTGGTTGGTACTGTGTGAATTACCA
GCTGTTGCATCTAATTCCTTCTCTATGATTGACCAGATACCCTTGGTATTAGCACTATAC
TCAATCAAACATTTTTTTCTTGTCGGATCAAGAAGAAGCACAGCAACTTTTGATATTGGC
CACATTGCCATGTCTGGAGAATTTTTGCTCGCGTCGAGTTCTTGAGCGATCTCACATGCC
TGTATTGCTGCTCTGTCAGTAACAGATAAACTCACATGCTTGCCAGGATTGCTCTCACGC
TCATGAACCATACTCAAGTATGCAAGCAGATCCTCTCCAGCAGAAAGAGAAGCACACACA
AGAAACCGCTTGGCATCTGCAAAAGCAAGCTGCGGCGACATCTTCCTGTGGTAGTAATTG
TACAAGATGCTGGCCGTGTGAATCTGCGAAACCACACACAAGTGTGATGAGCTAGCAGCT
AAACAGCTATTTAGTACACGCATTGTATCATATGCACAGACAGAGGAGCACTTTCTTAAA
TGTATCCGAGCAGAAACTGGATCAAAAGAACATATTACAGTGCACACAAACAGAAGAAGC
ATTTCATGGACACGACGAGACAAGGGACATTACCATGAATACCAAAGGAGAACACACTAA
TATAATTACAATGGTAAACTGACAGGGGAAAATGCAAGGATCACATGGCATGACTTGAAT
CAAACATAGCAGTCATTGTGCAGACAAACCAGACATCCATTTACACGTAATTGAATCCAA
TTCAAATCAAATCCATAGATAATTTTGAAGAACATTGCAAGGTCAAATTGATGGGCAAAT
AGCTTCCTGTTTTAGGGTGATGGCCAAATTGGGTCATTTTGAGAAAATAATCTGACAGAG
CTGGTCTCCCCTACTTTTTCATCATTTCGTAGAAAGAAGAGCAACTAACATCGTCGACCT
ACGGGCTTAGCAATAGCAACCAACATTCCAAATCTCTATTCACACGGTGACAACTGACGA
GAGAAGTGCAGAAACGAAGCGACGACTGCGGCTTGCCTTGGCTCCCTAGCGGCCGCTCCA
CCGCCGCCCAGATGTACGACCCCGTGCTGCGTCCATGCGCCATCGGCGCCGCCCACCGCT
CCTCCTCCTACGCGACGGGCTCTCGCCGTCGCCGCCTAGAGCGGCCGGCTCAGACATGTC
AACGACAGACAGCTGCGGGGGGCTCCCGGTTGGGCTTCGCCGAATCGGCCTCCAACATAC
ACATCTAGGCCCATTACCCCATCCACCAGCTCCACTGAGGCAAGCCCACCAGCACAAAGG
TCTCCTATGGATGTACTCAAAAAGAAAAGAAAAATCAAGGCCCACCACCTCGCCTCCTTC
TTCTTCTTTCGCCCGACTCCTCCCATTCTCGACTCAGAAAAAAGAGAGTTCCTCGCCGGG
ATCGGAAGCGCCGCCGCACGTCACAAGCATCCACTGGAAATCAGCCTTGCGGGCGGGCAT
TTACGCGCATCCCTCCCCTCCCCACCCAGCGCGAACCTCAACCCCGCTCCCGCGCAGAAA
CGACCAGAGAGAGAGAGAGAGAGAGA