Contig Data
morexGenes
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Map Locations of contig_197566 (8882 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_197566

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_29110 4 6672 bp MLOC_29110.1 Available Available LOC_Os09g04110.2, FRAME:+2, EVALUE:0.0, 13109.m00335 protein coatomer alpha subunit, putative, expressed
MLOC_29111 1 216 bp None Available Available None





CDS Structure of MLOC_29110






CDS Structure of MLOC_29111






Contig Sequence (8882 bp)

>contig_197566 8882 assembly3_WGSMorex_rbca.fasta
GAGGGGCCCACAAGCCAACATGACACCGCCCTGGGAGCGCCCTGATGGCTTGTGCCTCCC
TCGTGGCCATCCCGACTCTGTTCTATGGCTTATAAATTCGCTTTTACCCTAGAAACACCA
AAAAAGAGTCCCGAAACACTTTTTACGCCGCCACAAGTCTCTCTTCCAACGAGAGGCCAT
CTGGAGCTCCGTTCCAGCGTCCTGCCTATGGGGGGATCAATCATGGAGGACCTTTTCATC
AACCTTGTTGTCCTCATGATGATCTATGAGTAGTTCACCACAGACCTACGNNNNNNNNNN
NNNNNNNNAGATGGCAATCTCTCTCTTTGATCTCTAATACAATGATCATCGCATCTTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTTTGTTGGGATCCGATAAATTAT
GGATTTATGTTCAGATTATTCATGATAAATATTTGAATCTCATTTGAATACTTATATGAT
TCTTATATGCATGATTATGACTTCCTCGTCGTCGCCAACAAGGTCAAGCCGCCTTGGGTA
TCGGATCGAGCTGCCGTGTACTTCTAATTAGCTTTTACAATAGATCCGTCTCTTTTCAAA
AAAAAAGAGTGTGAGTAAAGATGTGTAGTTTTGTAAAAGAAAATAAGGTAATGGGCAAAA
CTAGGGGGCTCCTTGTTTTCTCTCTTATTAGAAAGACACAACTCAATGCAAGTAGTGTGC
AGGCAACGCAAAGCGCTGGCGATGGCGGGGATCCGACGGCCGGGGACGGCCCGGGGCCCG
CGCTCGTCGGTGCGGATGGAGTAGATTAAAGATCCCCACCACCACCACCACCACCGCGTC
TCAGCAGCTTAAGCAGGACACACATCTTCTTCCCCTCCGAGATCCAAATCACCAAACTGA
CAGCAGCCCAGATCCACCCACCCCACCTCACCTCTCTCGCCCCCGCCGGTGGGTTTAGGG
GCGGCCGCCGGAGAGGGAGGGCGGCGGCGAGACGAGATGCTGACCAAGTTCGAGACCAAG
AGCAACCGGGTCAAGGGCCTCGCCTTCCACCCGCGGCGCCCATGGATCCTCGCCAGCCTC
CACAGCGGGGTCGTCCAGATGTGGGACTACCGCATGGGCACCCTCCTCGACCGCTTCGAC
GAGCACGACGGCCCCGTACGCGGCGTCCACTTCCACAAGACACAGCCGCTCTTCGTTTCC
GGAGGTACCTTCGCCTGATCCCTCCCCTGGATCTCTCCTTCCCCCGCCGCCCTGGATCTG
GCCTTGCGCTCCCGCGGTTACAGCTTCGATCCATCAGATTACACTCCTTGTTCTTCGATG
GCGTCAGCTGATCTCGGCGTCCGCGGGCCGTCATTCGTTCGCAGTTATCGACCCACCGCG
AAACAAGCACTCTGATCGCACTCCAGTAAGCCTGATGAGCAAAGAGGAATATGACCAGAT
CTCTTGCTCATTCTTGTGGGTTCTGCTTAGCTGTACTAGGACCCGGGTCTAGATCCCGAC
TTTAGTTTCCATTTACATGATCCGGGATATGCCCCATGGGATTCTAACTCTGATCTTATC
AAGTACGAGTACACTAGTACAACAAGTTCCAGGTACCTGTCAGTCAACCCATCCATCATA
TGATCCCAGAAATACTACTTGCAGCAACATTTTCATTATCTAAGCAAAATAATGACATAT
CTTATTGGCCATATATGTGGTTTGCTAGCTGTGTTGCAACTTGCTGTGGATTCTCTGTGT
GTACATACCTACTCTCTGCTACGTTTCTTACTTCTGCCAAGTATTAGCAAATTCATGCCA
TGCAAAAGAAAAAAAGTACTAGCAAAATCATGCTCACATTATATTCCTATATACCCCCTC
TGTTCTTAAATATAAGTCTTTGTAGAGGTTCCACTACGGACTACATACGGATGTATATAT
ACATACCTTAGAGTGTAGGCTCACTCATTTTTCTCCGTATGTAGCCTCTAGTAGAATCTC
TAAAAAGACTTATATTTAGGAACGGATGGAGTATAAAACTGGGCTCTAGTTGCGCATGCG
CTCTGCTATGTCTCCTGGACGCGGTAATGGATTCTGTCTGAGGCTTTTGCTCTTTGGTTT
GTGTGTTGCAGGTGACGATTACAAGATCAAAGTGTGGAACTACAAGACGCACCGCTGCCT
CTTCACGCTCCATGGCCACCTTGACTACATCCGCACTGTCCAGTTCCACGACGAGCACCC
GTGGATCGTCAGTGCCAGCGACGACCAGACAATCCGTGTCTGGAACTGGCAGTCGCGCAC
CTGCGTGGCGGTGCTGACGGGGCACAATCACTATGTCATGTGTGCTTCCTTCCATCCCAA
GGAGGACCTGGTCGTGTCAGCGTCTCTGGATCAGACCGTCCGGGTGTGGGATATTGGCGC
TCTCAGGAAGAAGTCGTCGTCCCCAGCCGATGACATCATGCGTCTCACCCAGATGAACAC
TGATCTGTTTGGAGGCATCGATGCTGTGGTCAAGTATGTCTTGGAGGGTCATGACCGCGG
GGTCAACTGGGCCTCGTTTCATCCTACCCTGCCACTTATTGTTTCTGGGGCAGATGACCG
GCAAGTGAAACTCTGGAGGATGAATGGTAACACTGTTGATCCCTTCTCAACCTTGCACCT
TTTTTTTCTGCATGATACTCAACGAGCATTCACATGCCAAGTCATAGTGATGATATGCAA
CAAACTTTCACGTGCCAGCTAATAGTATGCCACTATTCACTTTCATTTAATTCTGTTAAA
AAGTATGTTTTGTCTTGCTGCTTCGTGAATATTATAAAGTTTGTTTTATCTTGCCATTTC
CTGAGTTTAGATGTTTATGAACAGATACAAAGGCATGGGAGGTTGATACTCTTAGAGGTC
ACATGAACAATGTCTCCTGTGTATTGTTCCACGCGAAGCAGGACATCATCGTATCCAACT
CAGAAGACAAGAGTATCCGTGTCTGGGATGCCACAAAGAGAACTGGTATCCAGACATTCA
GGCGGGAGCATGACCGCTTCTGGGTCCTTGCTGCTCACCCTGAAATGAATCTTCTTGCAG
CTGGTCATGATAGTGGCATGATTGTGTTTAAGTTGGAGAGAGAGCGCCCAGCTTTCGCCG
TTAGTGGTGATACAGTTTTCTATGTGAAGGACCGCTTCCTCCGTTTCTATGAGTACTCTA
CACAGAAGGAGGTCCAGGTGGCTCCGATAAGAAGGCCTGGGTCAGTCAGCTTGAATCAGT
CACCAAGGACATTATCATATAGCCCAACTGAGAATGCTGTCTTGATCTGCTCTGATGTTG
ATGGGGGCTCATATGAACTCTTCATTGTTCCTAAAGATTCTGCTGGCAGGGCCGATTATT
TGCAGGATGCAAAGAAGGGATCTGGCGGTTCTGCAGTTTTCATAGCCCGGAACCGGTTTG
CAGTCCTGGAGAAGAGCAGCAACCAGGTTTTAGTGAAGAGTCTTAAGAATGAGATTGTGA
AGAAAAGCCCTCTTCCTATCGCAACTGATGTTATTTACTATGCTGGAACCGGTAACATAT
TGTGCAGAGCTGAAGACAGGGTGGCCATCTTTGATTTGCAGCAGCGGCTTGTTCTTGGTG
AACTCCAGGCATCTGCTGTTAAGTATGTGATCTGGTCAAATGATATGGAGTCTGTTGCAC
TTCTCAGCAAACATGCTGTGGTCATTGCAAACAAGAAGCTTGTCCATCGCTGCACACTTC
ACGAAACCATACGTGTAAAGAGTGGTGCCTGGGATGAAAATGGTGTGTTCATATATTCCA
CTCTGAACCATATCAAGTACTGCCTTCCTAATGGGGACAGTGGCATTATCAAAACACTTG
ATGTGCCTATTTACATAACCAAGGTTGCAGGGAACACCATTGCCTTCCTGGACCGTGATG
GAAAGAACAAGATTATTACAGTTGATGCTTCTGAATACATTTTCAAGCTGGCCCTTCTAC
GGAAGCGCTATGATCATGTTATGAGTATGATTAAGAACTCACAGCTGTGTGGGCAGGCGG
TCATTTCTTATCTGCAACAGAAAGGATTTCCAGAAGTTGCTCTCCACTTTGTGAAAGATG
AAAAGACCAGATTTAACTTGGCCCTTGAAAGCGGGAACATCCAAATCGCCGTTGCTTCCG
CAAAGGAGCTTGATGACAAGGATCACTGGTACAGGTTGGGAATCGAGGCTCTGAGGCAGG
GAAATGTTGGTATTGTTGAATATGCATACCAGCGGACAAAGAATTTTGACAGGCTTGCTT
TTCTTTATCTCCTAACTGGTTACTTGGACAAGGTGGGCTTTATGTCTAAGATAGCTGGGC
AGAATAACAATTTGATGGGCCAGTTCCACAATGCATTGTATCTTGGAGATGCTAAGAAAA
GAGTTGAGATCTTGGAGAATGCAGGACAGCTACCTCTAGCATATGTGACTGCTGCCACTC
ATGGGCTCACTGAAATTGCTGATAGGCTTGCTGGTGAGTTAGGTGAAGATGTGCCTTCTC
TACCTGAAGGGAAAACTAGATCACTTTTAATCCCTCCAGCACCTCTCACATCCTGTGGTG
ATTGGCCATTGTTGAGGGTGATGCGTGGTATTTTTGAGGGTGGACTAGATGCTACTGGGA
GGGCAGAGCAGGAGGAAGATTATGATGATGCTGGTGGTGATTGGGGTGATGAAGACCTGG
AAATTGTTGATGCAAGTGCTGTGATAGAAAATGGAGATGCTGGCCATGCCGATGAAAGTG
AAACAAATGAAGAGGATGGGGAAGAGGAAGGTGGCTGGGACCTGGAAGATCTGGAATTGC
CGCCGGAGGCAGATACACCAAAAGCTACTGGTGCGGCCCGTTCTGCTTTGTTTGTGGCTC
CCACACCTGGCATGCCTGTCAGTCAAATTTGGACTCAGAAGTCATCTCTTGCTGGGGAGC
ATGCTGCAGCTGGGAATTTTGACACAGCAATGCGTCTGCTTAGCCGCCAATTGGGCATCA
AGAACTTTGCTCCTCTGAAGGCCTTGTTTCTTGATGCGCATATGGGCAGTCACACCTTTC
TGCGTGCATTTGCAAGTGCTCCAGTAATACCTGTTGCTGTTGAGAAAGGCTGGAGTGAAT
CTGCTAGTCCCAATGTGAGGGGCCCACCTGCACTTGTGTTTAGCTTCGCGCAAATGGACG
ACAAGCTGAAGGCCGCATACAAAGCCACAACCGAGGGCAAATTCCCAGAAGCACTGAGGC
AGTTCCTCAACATCCTATACACCATCCCTCTTCTCGTCGTCGACTCGCGGAGAGAGGTCG
ATGAAGTGAAGGAGCTTATCGAGATAGTGAGGGAGTACGTCCTTGGTCTCAGGATGGAAG
TCAAGAGGAAGGAGCTGAAAAACGACGCCACCCGGCAACAGGAGCTGGCTGCCTACTTCA
CCAACTGCAAGCTACAGAAGGTCCACATGCGCCTGGTCCTCACCAGCGCCATGGGCCTCT
GCTTCAAGGGCGGGAACTACGCCACCGCGGCAAACTTTGCCCGCATGCTCCTGGACAATG
GCCCGAACGAGGCCCAGGCAAAGAAGGCCCGACAGGTCCTGCAGGCCTGCGGTGACAGGA
AGGACGCCCACCAGCTGAACTACGACTTCAGAAACCCGTTCGTCGTCTGCGGGGCAACCT
TTGTCCCGATCTACCGCGGGCAGAAGGACGTCTCCTGCCCCTACTGCGCGTCCCGGTTCG
TGCCCTCAGTCGAGGGTCAGCTGTGCAGCATATGCGAGCTCTCGGTGGTCGGGGCGGACG
CCTCAGGCCTCCTCTGCTCCCCTACACAATCGAGATAAGATAAGTGGCAACGACGACTAT
TGTGGCTTCACCTCCGTGTTCATCATGTTTGTATCTCCAGTTCGAAGACTGTTGTGTCAG
TTATATTCTACCTACCAGAGATTTTTATCACCCAACTTGCGAGGAATAAGTATAGTATAA
TTGGTTCCATTGCGTCGTTTCTTCCCCCTTTTTTTTGCGTCATCGATTGATCTCGGCCTG
ATACGGCTGCGGTTGGTCAATCATCAACAAACGGTGTAGGATTTTTGGACAGATCCATAT
TTTTAGGGCACAATGATGATGTATTTAATCTGGATCTCATTATATGATGTTTGTGTATGC
TTGGCTGACGCACATTCTCTTTTTTTTTATCCTCCTGTGCTGTCATTATATGATGTATTT
AATCCTCTACTCTCAGGAGCTGATCTTGTGTGCGTTTGGTTTCTTTCCTTTTTTCCTCTC
CTGCTTGTGCTTTGTTAGTCTATAAGCAAAGCCTCTTCCAGGGCTTGCAATCTTCACAAT
GCATGTGCATAAAAGCTTGTTTCCTTTGAGCAAGAATAGCATGTATCCCATAAGATTGCC
GAATAATAGATACCTACCGCGGTCGCCTCGATACATGCCAAAATATAAATCACCCTTTCC
TGAGATGAATATGAACGCAAAAGCATCATGCATGGCCTCTGCTTCGCCCCCCTTGAGGGT
AACCGAAAAGCAAAGTCGGGTGTTCCTTGCTGGTCAGGAGCAGCAACTAGATGTAGATAG
AACCACAATGCTCGCAATCTCCTATTTTTACCAGGCCAAGAATTTTTTTACATTTACCAA
CTCCCAAGTTGACAGCCGCCCTGTGAGGCAGTGTCACACATAAATGCATAAGTTAGATAT
AAAAGAACACCAAATTGTGTTTCACTCCTGTATCACCAGCCCGAACACAGAGACACGCAT
GCAAACTCAAACATTAGTAAAGCTTGTTCATAATAAAAGAGTGAGCTGAATTGATGCGCA
TTACCCCTAACATGCTTGCCTACGCTGATCAATTGCAACCTAGTAGTATATGACTAAGGT
ATATTTACCTCTCCTGCACATAAAACTTTACATTGTGTTTGTATGTTTGCATTCGGACCT
AGTATTGGGTATTGACATTCGTTTGGGCCGAATACCCCGAATACCACCATTTGGCTGATC
TTGGGCCGAATACCCCGAATACCACCATTTGGCTGATCTTGGCATTCAGCCGCGACATTC
GGGCTCGATATCGAGCGAACCGTCCCGGAGGCAAAAAGCTCCCGGCCCAATTCGGAGGGT
CTGTCCTCAACATCGCTTCACATTGAGAGTTTGAGACATCCAGCGTCGTCCCTTCCATCT
CCCTCGTGTGTGCCCTGAGGAACGGCGGCGGCGCCCATCCCGCCCCATCCGCCTCCACCC
CGAGATCCGGTGGCCGACACGCCTGCACCCAAAGATCCGCTGGCCGGCACCACTCTCCCG
CCTCTTCTCATCCCGATGGAGCTCTCCAGAGGCTGGCGCCACCCTCCTGCCCCCGTCAGA
GCTCTCCGGCGGCTGGCGCCACCCTCCGGCCCCATCGGAGCTCTCCGGCGGCTGGTGCCA
CCCTCCTGTCCCACGCCCACCACGGTCTCCAGCGTCCGGTCTCCTCTTTGCTCGATCTAC
AACTCAATTCCTCACCATTCATCATCCAAACAACATTTGGCATGCAACCTCAATATCAAG
CCTCTGTTCCGAATACCTAAACATGCAAACAAAAATATTGGCATTCAATCTCAATACCAA
TATAGTGTGATATTGATATTCAACCAAATGCAATGCCAAGGCTCCCAATACAAACATCCA
AACACATCATAAACATGTCAACTAAACACAAAACTGAAGGGCCTCATGTTCTATTGATAT
AGCTTAATCACCACCTACACTGTAAGGGGGTGAACTCATCTGATAAACATTCATCTGATA
CATATAAGCACTGAAATAGCCACAGGCTGATGCTAAGGAATTGCGACCTTAAGCATAAGA
GTGGCAGTATATCATATACAGCAAAATGGCAATAAGCATCACCTACCCAGCGCACCGCTG
TGCTGAAGAAGACAATATGTGTACCCAAGAGATGAGAGGGCCAAAACTGCAATCGAGGGC
AGGTAGGTCACAAACTAGCCCATCGGTGAATTCTCTTCTTGATCCTGTCTAACCATAGAT
GCATATACATAAGCTAAAACAAATACGCGATTTATCCACCATGCAACGACAACAATGCTA
CTATGATCAGGATCAGCTGTGGCAACAAGCAAAGCTGACTGCTCAGGGTGGCATACTGAG
GATCATGCTGACAATGCATGGTATCAATCAAAGTTGTACTGGTATTGACAGAAACAAGAA
GAAGTCATTGGATTGCACAACGCAGCAGCACACACCAGTTTGTTTCCCTTTCATTTCATT
TGATTTCATCACCAAAAAAAATTGCTCAACTTCTCAGAGACAGACATACTAGAGACAGAG
ATTCACAGCTCAAATGCTACCACTACTACACCAGAGACAGACCGCGGATACAGATGGGAT
TTGTTTTCTTGTAGGATGGAGCTAGCGCTACCAGCTACAACAGCATCGCCAAACGGAATG
CGAGCGCGCGGGCCGTCAGAAGAGCCCCTTGTTCCTGCAGGCGACAGAGAGCGGAACGGG
ATCAGTGCAAAGCGCCGATTTTTTCTTGAGAGGGGCGGAGGAAGAGGAGCGGGGATGGGT
AGGCAGAGCACACCTACGTCTGCTTGGAGAAGGAGGAGGAGGAGGAGGGGGCGGCGGAGG
CGGCGGCGGATGCGGCGGACGCGGAGGAGGAGGAGGAGCGCTTGCTGCGGAAGATCATGT
AGGCGAGCGGGAGCACGACGCCGGCCATCATGATCGCCGCGCCCAGCAGGTACCTCGCCG
GCGACGGCGCCTCCAGCTCCATGGACGGGTGGGTGGGTGATCTGGATTTGGATCTGGAGA
CGAGGGTGGGGGGGTTCCAACTTCCAACTGCTGCTGGATACAACGACTCGGCCCAGGCTC
ACGCCTCCGCCGGGACGAAAGCGGTATTCATATGGTACGTTTTCACGTGAGGGAGGCTCC
TC