morexGenes - Barley RNA-seq Database

Contig contig_1936719

Source Contig contig_1936719

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1936719 (1639 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_1936719

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_28646	1	413 bp	MLOC_28646.1	Available	Available	LOC_Os05g28210.1, FRAME:+2, EVALUE:2e-12, 13105.m02905 protein small hydrophilic plant seed protein, putative, expressed

CDS Structure of MLOC_28646

Contig Sequence (1639 bp)

>contig_1936719 1639 assembly3_WGSMorex_rbca.fasta
ATGGGGCGCAAGGGCGGGCTGAGCACCAACGATGAGTCCGGCGGCGAGCGCGCCGCCAGG
GAGGGCATCGACATCGACGAGTCCAAGTTCAAGACCAAGTCCTAGATGTCGCCTAGCAAG
CAAGACGACTGCTTAATTAGGTTGGGGTGGGGTGTCAGTTAACCTTGCCGGATGAATAAT
GTAGGTCAGGAGTCCTGACGTAAGCACGCATGTAGGCGATCATACGTAGTATGATCATGT
GTGCTCGTAGCTGGTAGTCCGTAGGCTCTGATGGTCAGTCGCGTAGGGTAATCAGTCAGG
TGTCCGTGTCGGTCGGGAGGTGTGGTGGTGGGCTGGTCGGCAGCTCGTCCCAAACCAGTT
TACACTGTATCCTTGTATTTTCACTTCTTCAGTAATGCAGTCGTCTTGTGTGTCCTTGTT
GCTGAAATCTGAGACTTTGTATACTCTTCCTTTGCTAATCGTTGGCGCTAGCAGCTATGA
CGTTTCAAGGAGAACTGAAATGCCGCAAATACCGGCTCCTTCTCCCTAGTGCTTGCTAAC
TGTACATTTGACCGACCAAACTGATGAACAAGAAAGATGAAATGCCAAAACATAGTCCGC
TACCTTTACTATTGCTTAGTTTGGTTCAGCATCAGCAGGCCTTGACAGGAAATACAGACT
TACGATAAGGTGTGGGCATGCTGAGTGTGAACAAATCATTGACAACATGGTGATGGCTGA
GAAACAGAATTGTCTGATAATCAAAATCCTGAAATCTAAGTCTGGAGCTAGATGATGAGA
TTTTGGAGTTTGTAATCTTTTCTTCCGTGTAGTACTTATGGCAACTTCATCTTTCTTTTC
AAGGCCTGCTAATGCTGATGACAACTTCATCTTTCTTGTCAAGACGATAAGTTCGCGCTA
ACGGACGGCCATCAAAGCCCGATCAAGCTCATCATTAAGGAGATCGAAAAAAATATGCGG
TTAACACGTTTATTTATTTCTTTAAAAGGTGGATTAACCCCGGTTAACACGTTTATTTAT
TCCTTGCTACATTTTATTAATTATTCACCTTACAAGTAGTACATCAGTTGTCCGAAACCA
CTATCTTCACAACAACTATCGCTACTCTTAACCACTTGATGAATGGGTGCCGATAGTCCG
AGCCTAATACCAAACAGACATCGTACCAAAGCCTAACATCTAAAGTCGGAGGCCCCAACC
GAGCCACATACTGGGTTTAGGGTACAAACCGGTCCGACGCACTCTCATGTGTGGTCGCCG
CCATCTTTCACCAATCCGTCTTCAGAGAAGAAAATAACACACCGACTTGCTAGACCTCTC
TCCATCGACGCCACCATGACGCCGGAGAGCTTCCACCTCCTGCACGAGTCCATCTCCACG
CATCAGACACGAGGTCCATCTCCACGCATCAGACACCGAGTCTCTGATTCGCCACGCTGC
CGAGATCCACCGCCATCAATGAGTAAGATGAAGCACCGCTTTACCAAAAAAGCCGTCCAC
TGGTCCCTCAANNNNNNNNNNNCCTCCAAGAATGACGTCCCCAAGAGGAAAACGACACCT
GCGCGTCGCCGTCATCCGATCTACTGATCTAGGGTTTTTCCTGGAGGTAGCGGATAAAGG
TCTTGAGCTTCTCCACGGC