morexGenes - Barley RNA-seq Database

Contig contig_191562

Source Contig contig_191562

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_191562 (4340 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_191562

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_28414	1	2129 bp	MLOC_28414.1	Available	Available	LOC_Os06g12780.1, FRAME:-1, EVALUE:2e-31, 13106.m01404 protein OsDegp10 - Putative Deg protease homologue, expressed
MLOC_28415	1	659 bp	AK359231	Not available	Available	None

CDS Structure of MLOC_28414

CDS Structure of MLOC_28415

Contig Sequence (4340 bp)

>contig_191562 4340 assembly3_WGSMorex_rbca.fasta
GGGAACTACTGGTGAGTGGTATCAGATGGCTAATACTAGTGATGTGGAATTCATTTTCAA
CACAAAATCAACCCATCTCAAAGCTTTAGACCATATATAGTGTAATATGCACGGAAGGAA
TGACATTATTTATGACCATAATAGAGTTTCATTCGATGACCCAACTCAATACGAACACTT
TGTACTTCATTGGAATGAGTGGTATAACCTATAGCCAGAACTGGAAGTTACAGCCACTAA
AGTCTAGAGCAGATAAAATAGAACATGTGTCGTAAAGTGAACAAGAATGCATGATAATAC
GTACATACATGTATAAAGTATGACAGAAGCTATAACAAACCTGTGCCGTCATTGGCGATC
TCAATACCATCAAAGCTAAGAATAATATCAGAAGGTTGCATGCATCCAGATTCAGGAGCA
GTTGGTTCAATTCTTCTGATACGAACACCCTTTTGGTCAGATTTCATTCCCATTGCCTTA
CGGAGATCAGGATTTTCCATTTTCTGCCATTCTATCCCAAGTATAGGGAAACCTGGCAGG
AGAATGCAAGCAAAAGGTCAGCTAGTTGGATGCAAAACAAAGAAGATTATACATGTCGAA
AACACATATACCAGATTACCAATTATAACCTGGATATTAATACAAGAGAACTAATTAGCA
CAGGACGTTTTTTTTAAACAAAAGCAAGCCCTCCATCCATCAAAAGATTGACGAGGTTAT
AAGAGAGAGAAAAAACACCAGATCATGATTTTCGAGTCGATGAGTCGTTCTGGGGTAGCG
ACTCATGATGAGTCGAGCCTGGCAAATCGACTAGTCTCAACTAGTCGATGGGTTTGAGTC
AACCTTGGCAGTGCGACTCATCAACTAGTCGATGACTAGTCGCGCAACTCGAAATCCATG
CACCAGATTGCATGGGGTACAACACTATGTTCAGCATTGAATTGAACATATCTTTTAAGC
TACTCGTACAGGCAATGCAGGTACAATGTGCACCAGGAGCACATGTGATGACATGGAGTG
CATAAGAATAATTTCCAGGTGAACACAAACAACGTCAAAGGAAGAACTAATGGGCTGCTT
AAGTTTCATGCCCCTGACAGACAAAGTTTTACCGAACATTCACCAGACTCCCCTATGGTT
CTGATAAGCTCTTTCGACTTTGGCTCTTAAGTTCATTGTGGAGCCAATCGTGGCTAAAAA
CTGTGAAGCCAATTTGACCACCAGGTTTTGTAACACCAGTTTAACCAAGCACAGGCACTT
CATTGGGAACAAAACAAACAAGCTCTACCTCATGTAGTTGATAATTTAACATTCTTGCCT
ATAAGCAGAGTAACTTATAGGATGCTCGCATCTGAATGCATTAGATAAATGTTCAATTCC
TTAATCAGGTAACATCCAACAATATCATATTCCCATTTGTATTTGGCTAATAAAATATGT
AAATGAAAATGGAAAGGGCGCTACTCGGTGCGTCTCCATCACTGGTCCCAGCCACATCTG
CAAGGTTACTTTAGTCATTTGGGTCAAAAACTAGCATCTCGATGTTGGACAAACCTATCT
GACCACTTTGACTGACATCAACCACAAAATTAAAAAACAAGCCTAAAGGGAAATGTATCG
AAACAAAAGAGGAACATTTCCAGTGGAAAAATTCGTATGTCCCCCTGTATTAGTGAAATA
TTTGCAAAAGTAACAGTTTTTAGCAAACATTGGACAGTGCTAACCAAACAATGAATGAAT
CACATCACATTCACACCTCAAGAGGTTACATTCTACAGTGTTAAAAACAACAATTGTGCA
TACTGCATAGTGTTCAAAATATGAATTCAAAGTTTACTTGAATTTCATAATACGTTTAAG
ACATTGTTTCCCTGAAATAACAGTTTGTTCCTCTGTAAATTACATGGTCAACACTGAAAC
TTTTAGACCATGCCTGTCGGATGAGGAACTTATAACTGATAAGGATAACAATCACACCAG
TTTTTTTTCAATGATAATTACATGGAAGCTGATGGAACTCATAGAAGAAAGTGAGACTAA
GACAAAGGTTACAAAATAAACAGACTGCTTTTGCAAATATTAATGAAATCAAAATATATT
TACATATATGTCTACATAAGATGTTCCAGCATGAACCCTTTTCATTCATGCACCATCAAG
ATACACCTTAAACATGGTTTACAAGACTTACAGCACATATAAGCAACAATGGAATAAGAG
TTACCTGTGTACTCTCCAGATTTCTCATAGTCTTGAATGAAGTGCTTAATAACCGGGGTG
GGTATAACATAACCTATGTTTTCTGCATCTTCGTGTTTAAGAGATTGAAAAGCTATACCA
ACGCATTTTCCCTGATCATTAAAAGCAGGACCCCCAGAGTTTCCTGAATTTATAGCTGCA
TCTATCTGTTCATAAGTAACAACCAAGGTTACACATGTTCATAGAGAGGGCTGATTATAA
CTCCATGATTACAAAAACAACATACAGAAAAACAAAGACAACTAAAGCATGAAAATTGCC
TGGAAAAATATACCTGTAGTCCAAGAAGTTCTGTAGAACCATGAACATATGAGAGTATTT
CTATCCTAGATACTACACCACTTGTCACAGAAATTGTATCTCCTCCAATAGGGTAACCAA
CAACGGTGACAGCATCCTGTAGTGCTGGCAGCAATCCAAACTCCAGCGGCAGAACTCCTT
TCCAGAATTCATCATCATCAACAGTTAACATTGCTGAAATGGAAAATTGGAAAGGTCGGT
TGTGATTATCAAATGATATAAGAAAGTTGCTCCTTGAGGTCATTAATCAATAACTTTGTT
TGTTAGAAAAAGGTGCAAACTTGACAATGACTGCATGAATGCTTAGTCCAGTCTAGCTTG
TTGCCCTTTATTGTTTGTCAAGTCATCCTCCAACTTACCCACCATGTATCTCCATGCTAC
TTCTGTCATATTATGCCCTCCACTTCAAGTTAGTATTCATAATCCACATAACCAAGCAGT
TTATGAGAACGCGAGTACGTTACTAACGTTTACGACAATCACAATCCCTGGCTGCTAAAA
CTAGTCTTATGGATTGCACTGCTCAAGTACATGACAGCATCATGCAGCGCATTTTAGAAG
CAAAACTGAAGCTCCGGAATAAAGTAAGTGGGTAAAGATTAAACATGAGATTTAGATACT
TTTTCTTCAACTTTTGCAGTATATTACTGAGTTCATATAGCCTCATAAATATGTTAATAT
TATCACAAGGCTTCCGGCATAAGCTTGACAAGCAGCTAGTTTAGTCTAGATTGACCCCTG
TTTGAAAACAATATTATCACCTATTCTGGTATAAGCATGTTCCGATCTGCTAGACATGTG
GACCTAGCAATAATCATGTGGATCTAACTTATTACTGCTGTACTGCACAATATTAATCCG
CGAGCTAGACATGTGGACCAAAACAGTGGCTCTCTCCCACCTTTCTGTTTAGAGTACACA
TACAGAGTTCACAACAATTAAACAAGGTCACCTATTCTGGTATAAGCATGTTCCAATCTG
CAGAGAACAAAACATAAATAATCTGCGTGTTCCACAAAAGTCGAATTTTGCCAGCTCTGC
ATTACCTAGTGCATTTCTGTAATTGCAAAAGCACATAATGGTGGTACTAAACTAGACGAC
CTAATTCCACAAACATTGGCATTTCCATTAGACAGTGCAAGAGACCCACATGCCATCGTA
ACAGATGATTCACAAGCAGAGAACTATTATAGGTTTGTCAAGTTCATAATATTTCGCAGG
CTAAAACAGATAAAAGAGGCGGGTATGGGCATGCATACCAATGTCGCATTCGTTGCCAAT
GGCAAGGACGGTGGCGAGGTACTTGGTGTCCGAGCCGCGCTTCTTGAGCTTGACTTGGGT
ATAGTGCTCGACGGAATGGGCGTTGGTGAGCACCCTGCGCCCCCCGATGATGAACCCGCT
GCTGCTTGAGCTGTACTGCTTCTTGCGCTGCCATGGCATTGAGAAGTTCGGCTCCGTGTG
CACGCAGAAAACCTTTACCACGGCGTCCATGGAGGGCATCACCTTGGCCACCTGCTCCCA
CCGCAAGGGCTCCACCGCTGGGACCTCCACCTTCATGTTGGCCGCCCCCTTGGGCGCGCC
GCGCCGTGTCGGGGAGGGGGGAGCGCGGAGGGCGGCGTCGGCATCTGACGGGAGCTCGTG
GCGGCCGCGTCGGGATTTGCGGCGGCCGCGGGGGCCGGAGGAGGAACCTGGCTCGGGGGC
GTCCGAGGCGGAGGCGCGGGGGGGAGGGGGGAGGGNGGTGACAGGGAGGTAACAGATCAT
ATACGACAAAAACACAACAT