Contig Data
morexGenes
Links



Map Locations of contig_191532 (4252 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_191532

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_28407 3 1952 bp MLOC_28407.1 Available Available LOC_Os07g02490.1, FRAME:-1, EVALUE:8e-89, 13107.m00173 protein retrotransposon protein, putative, unclassified





CDS Structure of MLOC_28407






Contig Sequence (4252 bp)

>contig_191532 4252 assembly3_WGSMorex_rbca.fasta
AGCTGGTGCAGCTGCTTCATCGATTGCCTGACGAGGACGAAGTTGTCATGGAGACTCCGT
CCTGGGATGAATGCATTCTGGTTGCGGCTTACCAATTCTCCAAGTCTTGGCAAGACGCAG
TGAGATCACTTTCGTGAAAATCTTGGCCACAATGTGTATGAGGCAAATCGGGCGGTAGTC
GCCAAGCTGTCAGGCGTCGGCGCGCTTCGGAAGCAGGGTCGGGAGGGCCTGATTTAGTTT
GTTGAAGCCGCGGCCGAGCAACTCAAAAAGCTGCTGGAAGGCATCCAGAAAATCCTACCG
TACTATGTCATAGCATGCCCGCAAGAACTCAGTTGTAAACCCGTGGGGTCCCGGGTGCTT
TTCGGGTTGGGAGGCGTTTGACAGCGTCCCAAATCTCCTCGTGGCTGAATGGTGTGTCGA
GGCCAGTCAGGTCGCATGGTACAATGAGTTGCGACAAGTCCATCGAGTGGTCGCAAGGGG
CGTGGGAGCCGAGCAGCTCGTTGAAGTGTGATAAGGCTGCATGTGCCATCCCCTCCTGGT
CTGTGATCACGTTGCCATCCACAGTGAGGCTGAATATGTGGTTCTTTTCGGCGAAAAGAG
CATTGCCGGTGGAAGAACATTGTGTTGGCATCACCGTCTTTAAGGGAAGCGATTCTTGCG
CGTTGCCTCGCAATGGTGCGCTCCAAGGAAGCGAGCCTAAGATAGGTGATCTTAAGTTGC
TTGCGAACCAACCTTCAGCAGGGGAGAGCAGGCGGTCCTCCTGGGCCTTGTCAAAGCGTG
AGATCAGCTCCCTGGAGATGGCCATCTTGTCCCGGATGTTCCCTTTGGATTTGGCGCTCC
AGCTCGTCAACTTGCGGGCCGTGGCTTGGAGCCGTAGCATTAGCCGACGGAAGGTGTCTG
TGTCATGCACCGAGCCCCAAGCGGCGGCCACCATGTTTCACCCATCCAACCTGAGCCAAT
AATCCTCGAAGTGAAAGCGCTGGTGTGCCGTGTGCGTGGGCGAGCAGTAAAGGAGGAGGG
GGCAGTGATCCGACACGACGGAGCCGAGGCAGCGCAGATGACAGCTTCCATGTGCATCCT
CCCAGTCCGAGGTGCAGAGCACACGGTCTAGGTGCACCAGGGTTGGTGGTGACAGTTCGT
TCGACCACGTGAATCGTCGACCGTTGAGATATATTTCCTTCACAGCAAGGTCGTTGACGA
CGCGGCGCCAATCTGCCCATCATGCGGCGGTGCAAGTTTCCGCAGCTCTTATCTTCATCG
CGCAGTATCAAGTTGAAATCCCCGCATAACATCCAAGGCCCTGGGCAGTATGTGCGTATG
TCGGGAAGCTCCTGCAAGAAGGCAATCTTGTCGGCATCTTCCTGAGGGCCGTATACCACA
GAAAGCCACCAGGGCGTGCCGGAGGACGTCGCTACCTTGGTCGTGAGGGCGTTTGTGGTG
AACATCGGGTCCGTGATGGTCGCAGCCCGCCTCTTCCAAGCCAGCAATATGCTACCCCGG
GTACCTTGTGCCGGGAGATACGTATAATCATCAAACTCAGATCATAGCGTCTCGAGGACA
CAAGACGAGCGCCATTTTTGTTTCCTGTAGGCATACAATGGAGGCGGAAGTGGTGTCGAG
CAGCGATCATATGGTTGTGCGCCGAACACGCGCGTCCACCCACATTCCAAACTGCAATTC
TAAGGTTGTGATCCATGAACATGAGATCGACGAAGGGTGCAGCGGGTGCGGCCAATGACG
CGGCGGTCATTTGTGTAAGCGTCGCAGCGGCGGCCGAGGCCTGCAAGCTTGTAGGGATCT
CACGACCAACCAGGGCTGCAATGGCGGAGACACCGGTTATGGAATTGGCGCCACGAACAG
CCCATCGTATGCCTTCATCTCAGCAGAGGTGATGCGCTGGTTAAACCCAACGATCCCTAG
CGTGCGTAGGACCTGGACCTGCACTCTTCTCTCCGCAGTGGGCGGCACAGGCTGAACTCT
TACTTTATACAGAATCACTATGACAAGATTCTTTAAATATTGAGGTGGGCCGTTTCCTTA
CAGTGCTTGCGTAGAAAAATTGAAGTTTGAACACCACTAGTACTTCTAGTAGAACATTTT
ACCTTCGGATCAAGCCCCTCGGTATTGGCTTTGATGTAGCCTGGATTGTTTCTGTCCAAA
AGACCAAAATAGCAAAACTGACATTAAGCAGTAAGAAGTAAGAAAACACAGAGAGTACTT
TAAAAGTAAACAAACTTAACTTCTACAAATCAGCTACTGAAAATTAAAAAGGGGGTAATT
CTGGACTATTAACGTTTGAAAGAAGTGTTCAATATTTTCCTCGTCATCTTTCTAAAGATT
TTACATAAATACAACAATCGCCAAACATCATTAGTGTATTGCATAGCACAAAAAAAGAAA
ATAGAAGAAGAAAGCACTTGCAAAAAGATTCCAAACAGTGCATGCAAATGATCCAGTTAA
GTAAACTTCATATGACGTAGGCTACCTGCTAACTCTGTAGAACAGCACTTGTGACGCCAA
GGCAAGAGAAATAGCAGCCCATGACCAAAGACCAACAGCAGCAGTGATTCTAGAAAAATC
AGATGCTGGAGAGGTTTCATAATCAGGTCAGATCATGAACGATGCTTTACAAGTCTTAAG
CTTGAACATCGATAACAAAACCTCACAAACAATACTCACCAAAAACAATTGATTTCAGGA
AAAGGATCACGAGGATAACAAGATAAGTAAACAGGATAGGTGCGTATCCAACCTTGCCCA
GCCTCCCTGAGCAGTACTTGTCTCCAAAGCTTACTTTTGTAGCATTAGACTAAAAGCGGA
GAAACGAAACTTCCGTTAGTGGAGTTCAGAAGATTAGTACATAGTGCACACAGTAACGAG
TCCAAGTCATTTTGTTGGAAAACATCTCGAAGAGGAAGGGGAGAAAGAAGTAGGGAAACA
AGAAATAAGAACAAATGTGAGTGTACCAATCCAAATACAAGTTTAGAGAAATAATTTGCT
ACCCATGGCGGTAGCTATGCATGGCCCCAATTTGTATCTCTAATTATTTTGGTAAATTAT
TTGGACTATGAAAAATAACTCTATAACAAAAGTATCGTGACTTCGGACCAGCCAGGCAAG
CAAACAGGCAATTATGCCAAAAAGACAAGAAAAAAACTACGAGAAGTGAGAAAAGGCCCT
TTCTACACAATGAAAAGGCACTTGTGTCAAAAAGGAAATAAAAAAGACAAAGAGAAGTGA
GAAAAATTCATTTCTATACAACAAAAATGCACTTGTGCCATCAGAAACCCGACACCTCAT
ATATCAAAAAAGGCATTTATGCCAAAAGGTGTGTAGGTGCCACCATGCGTGCGTAGCTAC
CACCATGCATAGGAAGTAGCTACGCATGGCCCCAATTTGTATCTCTCGTTATTTTGGTAA
ATTATTTTAGACTATGAAAAATAACTCTAACAAAAATATCATAACTTTGGACCATACAGA
CAAGCAAACATGCAATTATGCCAAAAAGACAAGCAAAAAGACCAAGAGAAGTGAGAAAAG
ACCCTTTCTACACAATTAAAAGGCATTTGTGTCAAAAAGAAAATAAAAAAGACAAAGAGA
AGTGAGAAAAAAAGTCATTTTATACAACAAAAATGCACTTGTGCAATGTCATCAAAAACC
CAACACCTCATATATATAAAAGAAGGATTTATGCCAAAGGCTGTGTAGGTGCCACCATGC
ATGCGTAGCTACCACCATGCATAGGAAATCGCCTCTCTACAAGTTTATATGTATTTTGAC
TGCAAATATTTACCACAGCCCACACCTATGTAGATGCAGAAGTCTATCTTAGCATTTAGT
TAAATTTTCCGGATCAAACAACTTTATATCTTAGTTAAGAAACAATTCCAGGAGAAAACT
TACAAGTATATTGGAAAGATGCCGTTGACCTTTGTCTGCTGCAAGTTGCGAAGGAGTAAA
CCCACCGCTATCCCTCAATGTTAGTTCCTGCTTGGTGCCTGCATGTACAAGAAGGGTGCA
AACTTCTAAACTTCCTCTTATAGCAGCCCAGTGTAAGGGAGTGCAACCTGCATGACACCA
CAAAAGGAGCTTAGTGATCATGTGGATTGTAGGATCTACCTCAATAGAACTACCAGCAAC
TCATGATATATATCGTTCGTCTACTACCATAACGCATGCAACTTCACATGGTTGAAAATC
TAACTAATGATTCATCCCCTTACTATGTACTCCCGCCGTCCCAAAATAAGTG