morexGenes - Barley RNA-seq Database

Contig contig_191507

Source Contig contig_191507

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_191507 (1620 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_191507

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_28404	2	1008 bp	MLOC_28404.2	Available	Available	LOC_Os05g51790.2, FRAME:-1, EVALUE:3e-105, 13105.m05601 protein RecF/RecN/SMC N terminal domain containing protein, expressed

CDS Structure of MLOC_28404

Contig Sequence (1620 bp)

>contig_191507 1620 assembly3_WGSMorex_rbca.fasta
TGGAAGCTGGTTAAGTAGCATTCAAATTAAAGGGAAGAGGATGTGAGCATTAAGAAGGTG
AGAACATATCCTCCAATTCACAGATTCACTTATTTTCATGGGAGCTTCTTCTTCATGAGC
TCAGCCTATGGAAAAATGAACCAACAAATAGTATTATGAGAATGTCATGGTATATTAAAT
TACTATATGGATGTCATTCATCACAGAGAAACAATACAACAGACCTTCTTGAAGAGCTTA
TCTCTTTGCCGGACACGTTGGACATCTTTTTCTTGTTCGGCGTTGAGGGCCTTGAGGTTG
TTCAAGGTCTGCTCCTTTTGCTTTATAGCCTGAAATTCGACACAAGGTCGGTGGTCAATC
GAGCTGGTATGTAAGAGACAGTGTGTACGATGAAGCCAGAGAAGCTTCAGATGTTGAACA
GGGAAAACATGGAAGGATTGATGTTTACCACTTCAATATTCCTCAGCTCCCTGCTCCGTT
CTATAAGCTGGCGATGCTGAACAGGTAAGTTAGGATTGCCCACAGCTTTCTCCGTGTCTT
CTAGCGGCTGGATGGGGGTGAGCTTTGCAAACTCACAGAATCGATCTTGCAGCAAGAACT
AAATCGAGACAAATCGTCATTCGGGTATAGGTACACAGTGTCGCCTACTCCGTGAAGAAG
AGAGGATGACATGACACACAGACCTACCTGAGTGAGGTTGTTGATTTGGATGTTGAACTT
CTTGATGACGTCCAAGATATGCTTCTTTGGGACAGTAGCACCTGAATGAAAGAAACAAGA
ATCTGTCAAAAGTTGTTGTTGAGCAAGAGTATATATGTGAATAGAATAGAATAGATAGAT
ATAGGGTTTGTAATAGAGACCGTCGAGTAGCCACTCAGACTTATTGTTGGCATCGATCTT
GCGGGTGATGTGGATGTCGCTGGCCTGTGACTGGGAGCGGAGGGAGAGGCGGACATGGCC
GGACTCCTCGCCGCGCTTGACGAAGGCCCCGACGCTGGAGGCCCTGCCGAGGATGTAGGG
GTCGGTGGCGAGGGCGAGCGCGATGGCGCAGACGAGGGAGCTCTTGCCGGAACCGTTGGG
GCCGACGACGAGGTTGAGGCGCGGGTCGGGGCGGCAGACGAGGCGGCCGTAGGTCATGAA
GTTGCAGAGCTCGATCTCCATGATGTTGCCCAACACGTAGTCATCGTCGCCCCGCTGATG
CTCATGCTGCGCGGCGGAGGTGGAGGCCGAGGCGGAGGGCTCGAGCTTGGGGCGCTTGGC
AGCACAGGCGGGCGCCATGGACGGCGGCGGCGGCGACGACGACGGCCGAGGCAATGGGTT
GGTAGGGCTTGGGGTTTGGGGCTGTTCGGCGGGACGGGACGGGACGGGGTGGGGAATTTG
GAGGAAAAAATGGAAGGCAACCGCATCGGTGCCTTTGGGCTTGGGCTAAGAATTATAGTA
GTGGCGCATTGGGTGAGTGGTGCTCCATTGCTAGTTAAACTAGGAATGACGCACTCCACC
CCGGTGCGTCATTAATACTTTTGGAAAAAAAAAGTTTGTTAGGAGTGGCGCACCGTGTGT
GTGGTGGGCGCCCCCGGTGTCTTTATTCATTAAACTTCTCCCTCCCCCTCTGGGGGGTGG