Contig Data
morexGenes
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Map Locations of contig_19 (2877 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_19

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_28210 1 564 bp MLOC_28210.1 Available Available LOC_Os06g49680.1, FRAME:+2, EVALUE:9e-41, 13106.m05327 protein expressed protein
MLOC_28211 3 1851 bp MLOC_28211.1 Available Available LOC_Os06g49670.2, FRAME:-1, EVALUE:1e-55, 13106.m05326 protein pentatricopeptide, putative, expressed





CDS Structure of MLOC_28210






CDS Structure of MLOC_28211






Contig Sequence (2877 bp)

>contig_19 2877 assembly3_WGSMorex_rbca.fasta
GCTCCCTGTCGCCGCCGCCGCCGCGCCAGGCGTGCTGCTTCCCCTTCTCGCCCAAGAAGG
CCCCGACGGCGAGGAGCAGGAAGGACCGCGCCGCCGGAGGAACGATGGGCGACGTCCTCG
GCATCGACGCCGGCGAGTGGGGCGACGAGAACAGGAGGGTGGTCACGGAGCTCAAGGAGC
AGCAGCGCAAGCTCAAGAAGGCGCTCGAGGAGCAGGTCAAGGTCAGCAGGGAGACGGCCA
AGATGGCGCGCTGGGTCAAGCAGGCCTCCGCGCGCATGACGCACACCGACGCCATTGACG
ACCTGCTCAGCGACATAGACGACGACGAGGAGCTCAAGTGAAGAGAAATCTGCTCTGCTT
TCCTTGTCTTCGGAAGCTCCTTTTGGAAATTTCCCTGGCTTTGGACAAACAAACTATATA
CATGAAGATGTTTAGCCTGCAATGCATAGTAGTTATATATGAGTTGGACTTGATCAGAAA
GAAGGATATAAATTCTGCTGTTTTAGACGAACGGAGGTGTATGGAAATGTTGGATCCTCT
GTTCTTGTTTTTCACTAAGAGTTATGTCTAAAATTACAAACCATAGCCACCATTACATGC
ACCAAGGTACGTACAGAGCTCGACAAATATATAATCTGCCAATTCAGGAGTAGAAGTACA
AGTTGGGCGTAAGAATAATACTGGGGAGAATTCTAGAGATTGCGGCACACAGACAAACGC
AGGGACAGTGACACTTAACCTAATTATTTGATCCTATGTTGAGTTTACAGTCGGGCCGAA
GCAGAGGGAATGTAAAGTGAAGACAAAAAAAAGTAGCTGTATGAAAATGGTTAGAGAGAA
TCATCTAAGTTGTCTACTTCAGAAGATGATTGTTTTCATAAGCTATCCTGATATGCATAC
AAGTCAATGCTCAGTACACCTAATATTCTGAAAACCACCACGATGCAGTGTGGTTCAGGA
AGAGGGCAATGAATGGAATTCCAAACTTATGATACACTTGACCATCTTTTTCCTTGTCCA
GATCCCCGGAAGTCTCCTTTAACTGTTTCCTTGACTATGAAATCTGAACTGCAGTACAAA
GGAAAGCACATATCAGTTGATCTTACGTCGTAAATGAATGTAATAGCAATGGGCTGTTTG
TTTGTTTGCATACCTGCATCGCCGAGCCAAAAATATGCAGGCGCCGAATGATATGAACTT
ATGCCCGACCTCAGAACTCCAATCTACCTAAAACTGAGGAGCAATCACAGTCGTTCTGAA
TCTTGTGCTTGCTGGCCCCATTCTTATTCCACAACAGATGATCTCCAGTGGAGAAAATGC
CAGAGGAGATTCTTTCGGTCTCCACCAAACACAGCACGTGGACTAGAACTTTCTGTGTGC
CAAGTAACTGTTGTCTCATGTTCTGTCATTTTAAAAAGGGCCAAAGTGTCAACTACAAGG
TTGAGAACCATACCTTCAAATATGAAATGAGTAAGTGATAAGTGAATATCTGCACAACAC
TTATTATGCTTCATAGTTGTTAAAGCTGTTTGAACACTTTTTGTTTTATTCAAAGAAATC
GGGAGCGCAGGAGCTCCTCAATTTGAAACATAATATTAAGTTGATGCCTAACCTTCCTTG
TCCTAATCAAGGTACTATTTAAGTTCTTTTCATCCTATTCAGCGGACAACTTACATAAGA
AAGTAAAAAAAAATCAAAGGGGCAACTCATTGCAAAAGGACATCTTGTATGAGACTAGGA
GAACTTGAGAACCATTTATATGCCAATTTCAGAGTAAATACAATCAGCGCACTTACATTT
TACTTTTACAAGAGATCCTCAAGCATGTGCTAGCAAAGTAGGGGCTTTTGTAGTTATAGA
CATTAACAGAGGAGCCACTTCAGAGCTGCTGGAGTTCCAATTTCAATAACCTGGCAAAGC
ATGCATCAACCAATACATCCTCGAAAACCAGAAGGAGACTGCTGCAAAAGTGCAAATGAA
ACACTTACATCCCATTTGTTCCATTGTAACAGATGCGTCATGCAACATTTCCCTAGCTTT
TCTATCCGGGGTACAACCAGCACGCTCCATTTCACTATATACTTCTGAAACCTATTCAAC
AAAATGAGAAAACTATTTCAAGCTCGCCAAATTATCCAGGCACGTAGATTTCTCTGATGG
TTCAAAATCTCAATAATACATATAGTACTAATTAGCACCGTATCAAGAAAATTAAATCTT
GATTAGCTAAGGAGAGGCTTGCATGTCACCAAAAACACTCTTCTAACAGTTAAGAGTTAA
GAGCTGAAAAAAAACATAGTTTTTAGTTTTTACCAAGGTTTTCTGTCGGCCACAAAGCAT
ATGGATACTTAAGCAGCTGAAGTAATGAAAACTACAAATACAGCAGGCGGACCTTCTCAT
ATCTTTTTACTCTCATGAAAGCCTTCATTAGAGTAGTGTAAGTCACAACATCTGGGCTCA
TACCCTGAGAAAGAATAAGCAGTGGTAAGAGACAGTGCAAAGAAAGTAAAATCATGGCAC
CCAAACAAGAACCCATAACTATAACAGCATACTCATTCATAAGAAAGTACATACACTGTC
CTTGATATGCTGGAATACAGCTTGAGCCTCCAAGTGCCTTCCGGCCGTACTAAAAGCATT
GATTAACAAATTCAACATAACAAGATTTGGTTCAATTCCTTCTGCCTCCATCAATTGAAG
AACACTTACAGTTTGTTCACACAAACCCTGAAATTCGAAAGCAAAGGAATATGATGCGCA
CAAGATGAAAAGGACAGACAGAAATTGAAGGTTTTGAGATCAGCGAAAAGGAGACTAAAG
TGACAGTGTTAGAATAATTATGAACTTTCCTTTGGTACGCCCCCCCCCCCCCCCCCC