morexGenes - Barley RNA-seq Database

Contig contig_187838

Source Contig contig_187838

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_187838 (1638 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_187838

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_27961	1	799 bp	MLOC_27961.1	Available	Available	LOC_Os05g51790.2, FRAME:-2, EVALUE:5e-100, 13105.m05601 protein RecF/RecN/SMC N terminal domain containing protein, expressed

CDS Structure of MLOC_27961

Contig Sequence (1638 bp)

>contig_187838 1638 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGTTACGCACCAGCTGAATCTCGTCATCTGTAACCTCGCGACGCTTGTTT
GTATTTTGATTTATTTGGTTGTTTATCTTCTTCATACTTGAAGTAATGGTCGTTTTCTCT
TTCTTGAACCCTCTACATAATAAACAGGGTAAAGAAAGAAGATGCGTATTCCATTAGAAA
CCGAAACCTCAAACTTGGGTGTCTCAAGCAGACACACGAGGTTACATCGCGCAGCAGAAA
CTTTATGGAATCAGAAATGAAATGTCAAAATTAAGCGTTATGCTATCTATCACCGATGTA
ACCAGAAATAGAGTTCCAGCTAAGTTTTTTTGTATGAATGAATACTATTTCAAGGAATAT
TAGTTGAAAAGTGAAGGATCAACAAAACAGTGTGTGTTTGAAACTTTGAATGAAAAAGGT
CTTGAAAAGGGGGCAAACACCGAACCATATACTACTAGGGACTTGCAGAAACATGTATAA
AGTGATTGGCAATTGAAGGAATTTAGTGCGTGAGCTGAATCATATTGGCTGTGGTGCATA
CTCGATAGGGGCTTTTGCATCTAGCCAGATCTTGGTTGCATCATCCATTTTCTTCTTGTA
GATTTTCTCCTCCTCCAGCACGTTCTTGAATTCCAACTTCTTGGCATCATATTTGAGCCA
TGGGAGCTTCTTCTTCATGAGCTCAGCCTGTGGCAAAATGAACCAACAAACAGTATTATG
AGAATGTCATGGTATATTAAATTACTATATGGATGTCATTCATCACAGAGAAAGAATACA
ACGGACCTTCTTGAGGAGCTTATCTCTTTGGCGGACACGTTGGACATCTTTTTCTTGTTC
GGCGTTGAGGGCCTTGAGGTTGTTCAAGGTCTGCTCCTTTTGCTTTACAGCCTGAAATTC
GACACAAGGTCGGTGGTCAATCGAGCTGGTATGTAAGAGACGGTGTGTACGATGAAGCCA
GAGAAGCTTCAGATGTTGAACAGGTAAAACATAGAAGGATTGATGTTTACCACTTCAATA
TTCCTGAGCTCCCTGCTCCGTTCTATAAGCTGGCGATGCTGAACAGGTAAGTTGGGATCG
CCCACGGCCTTCTCGGTCTCTTCTAGCAGCTGGATGGGGGTGAGCTTTGCGAACTCACAC
ACTCGATCTTGCGGCAAGAACTAAATCGAGACAAATCGTCATTGGGGTATAGGTAGACAG
TGAAGAAGAGAGGATGACATGACACACAGACCTACCTGAGTGAGGTTGTTGATTTGGATG
TTGAACTTCTTGATGACGTCGATGATATCCTTCTTGGGGACAGTGGCGCCTGAATGAAAG
AAACAAGAATCTGTCAAAAGTTGTCGTTGAGCAAGAGTATATATGTGAATGGAATGGGTT
TGTAGTAGGTAGAGACCGTCGAGTAGCCACTCAGACTTATTGTTGGTATCGATCTTGCGG
GTGATGTGGATGTCGCTGGCCTGTTGTGACTGGGAGCGGAGGGAGAGGCGGACGTGCCCC
GACTCCTCGCCGCGCTTCACGAAGGCCCCGACGCTGGACGCCCTGCCGAGGATGGAGGGG
TCGGCGGCGAGGGCGAGCGCGATGGCGCAGACGAGGGAGCTCTTGNNNNNGGCGTGGGGG
GCGGCGGCGGGGGGGGGG