morexGenes - Barley RNA-seq Database

Contig contig_1870091

Source Contig contig_1870091

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1870091 (401 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_1870091

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_27876	1	298 bp	MLOC_27876.1	Available	Available	LOC_Os10g27370.1, FRAME:-2, EVALUE:4e-19, 13110.m02351 protein transposon protein, putative, Pong sub-class, expressed

CDS Structure of MLOC_27876

Contig Sequence (401 bp)

>contig_1870091 401 assembly3_WGSMorex_rbca.fasta
TATGTAGCAATGCATCAATGTGAAAGACTTCTTTTTTAGGATCCATTTCCTTGAACAAAA
TGTGTGCATCGTTTGTCTGCACATATAAATATATGGTTAAAATATGCACAACACATATAG
AATATTGCACATCACATATTGGCGCATACCTTTTCTTCTATAGTCCTTCCACTTTCTTGC
CTATTTAAAATCTGCTGAAGGCAACCACAAAATTTAGAGGTCTCTCCGTTAATGAATGTG
TAACGACAATTAATTGCATTATCATTTCGCTCCGGCCATGATGATTCCTTGTGTCTGTTG
TAGTACTCTGAAATTCTAGCCCAATAAGTATCTCGGTTTTGATCTGTCCCAACAATATCC
AAACTTGTATTTGCCCATGCTGCTATGAGAACCTTGTCCTC