morexGenes - Barley RNA-seq Database

Contig contig_186958

Source Contig contig_186958

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_186958 (1574 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_186958

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_27867	1	110 bp	AK362023	Not available	Available	None
MLOC_27866	1	224 bp	None	Available	Available	None

CDS Structure of MLOC_27867

CDS Structure of MLOC_27866

Contig Sequence (1574 bp)

>contig_186958 1574 assembly3_WGSMorex_rbca.fasta
TACAGGATTCCATTTCTTACATAACAACCTCAGACAACATGCATGGAAATAGAAGAGGCA
ACCTGAACTAACAAATCTCACCTCCTATTATTTTTTTGCATGAAACTGAAGTGTTCTCCT
CAAATACATTAACACTAAAGGGAATAAGCAAGCGCCTTCTCTATGGATGAATCCCGCCAT
ACAATCTGCACATGAATGAATCTGAGAGTGGAGTGAGGTCTTACTTGTGGACGTTGGTGT
CGATGACCTGGCAGACGGAGAGGGAGATCATGCAGGTCTTGCCGATGCCAGACTGGGCCT
CGGCGATGACGTCGCGGCCGGAGATGATGGGGATGATGACCCGCTGCTGGATGACGGAGG
GCTTCTCGAAGCCGTAGCCGTAGATGCCGTGTGCATGGGTGGTGTCTCAAACACCTCAGG
TTCGTCGTCGAGGTCGATGGGGTTTGAAGCTGAAGCCCCCATATGAAGCAGCTCGCCGCG
AGTAGGAGGCGCTACCCATCACAGTGGATTCACTAAAACAAAGGATAACCACACATACAG
AATTATGTCAGGTAACAACATGATTGGGAAAAGAATATGTATGCATCACATTGCCAAGTC
AGTAAAGAAACATTATAGATCGTACGAAGACCAAGAATGATGAATGTAGAACATAGTAAG
TAGTCCAACTCATGCACTCGTTCATTGCTCCATGCTCATTTAACAATTTTCGTTGAACGA
TGCATATTAGCACCACACATGTTCACAAATGGCATTTAACACTGTTACCATTTCCACAAT
CATACCTGATTTGAAGCATCAACTATCTGATAGTTTAGGGGATTGATAAGAAAATATTTC
TAAAAATATATAGCAGAAAGGGATAACCATACAACAAATCTTAGCCTGAATTAACACACC
TTCAACTGGCTCAAGAATGTTCGGTAATTGACGAGTTGTTGCTGAATATTTACGCTTCAC
ACAAGGTTGTTTACACCACATAGCCTCAAAATCAGGCAAGCGGAAGCACAAAATCGCTGC
TATATCTACACTAACTCACTTCCAATTTAACGTGGTTACCAGGAAAAGAAAACAGAGTGT
TTCCTACAAGAACATGCATTCCGATCCAGGGAACAAAGGGGAAAACGAAGAGCAATTATA
TTCCAAAATGGTGGTGGTCTCCTATGAGAGGAACAACAGATGCCCGTGGTCCACCCTTGT
CTATGCAGTACAGTTGCGAGGTACAAAATCAAATTAAGTAACTCAAAAAGTAACTTAGAC
AGCAGTATGAATCATGCGTCAGAACCCTAAACGAAATCCGTGACCAGAGGCCCAGACCCT
CGCCGAAGGATCACGATCCACCAAAAACCGGTCGGAACCCAAATCTACCACGACCACATG
GGAGGAATCGGAGAGCAGCAGAAGGCTGCGCGCGCGTGCGTACCCTGAGGAAGAGCGCGT
GGGGGAAGTCGACGACGAGGTGGGCGAAGACCTCGTCCATCTGCTTGCAGGCCTCGCACT
AGGCCACCCAGAAGTGCACCGCCGCGTCCAGCTCCGCTCTCGCCCCATCTCCCTCACCGC
CCCGCCGCCGCTCG