morexGenes - Barley RNA-seq Database

Contig contig_184547

Source Contig contig_184547

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_184547 (2337 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_184547

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_27589	1	969 bp	MLOC_27589.1	Available	Available	None
MLOC_27588	2	1372 bp	None	Available	Available	None

CDS Structure of MLOC_27589

CDS Structure of MLOC_27588

Contig Sequence (2337 bp)

>contig_184547 2337 assembly3_WGSMorex_rbca.fasta
TGGGCATAAGGGAATTATGCCCCAAATNNNNNNNNNNNNNNAATGGCTAATTGGGCAACT
AAAAATAATTGCCAAACAGATTTAAATAAATCTGAAATAAAGAAAAACCTCAAGGAAAAG
ATGTTTTAAAAACCCCTCTCCTACATGTCCACACTCCAAATAAAATGGGCTAAAGGTGTA
ACATTTGTAAAACATCATAGGAGCAAGGAGGTTTTGAACTTGGGAATAAGAGAGAGGAAA
GGTTTGAAACTAATCAGGGGGTTTGTAAAAAAATATGCCAAGCAAAGCACACTTCACTAC
ATCACACCACATCATCACACGTAATCACAAGATCACATCCAACAGAAGACCACAAACACC
ACATGGAATCATATGACCATTTTGCAACAACAAGAACACATGGGCATGAACTAATATGTT
ATGCATGCATGCAAAGAAAGGAAGTAATAAGGGGCATCACATGAAGTCATGGGCACAAAC
GAAATCATCACATGTCTGATAAGGTGGACCCACTTGCAACAGGTTCCAAATAGGGAAGGT
TTACACTTGGGGCACTACACATAGTCCTTGTATGTCAATGACCAAAACCTTCAACCCACA
TTTCACAAGAAAACTCAAGATAAAACCCTGATTGCAAGGATAATAATGCTTACTACTATG
AATATATACCTTAAATATAGCAACACCTAGATCAGGGCTGTCAAACTGGACCTTGTTACA
ATCCCGCTCTATGATTACCACTTTACCATCAGCAAGTTCTCTGGTACTCGGGTGATGAAC
AATTACATGCTGGCCCTGAAAAAGGGGTGCTGCACTTGGTAACCTATTTTCTGGACATAG
CTTGCGGTTGAAAATATACTCTAAAGTTTTTTTTAAAAAATATATGAGCAAAAATGTCTG
AATTATTCACACATTGATAAGTATAATAGTATTGTTGTTAAATAACTGCGGTACGTATAG
CTGTATTTACGTGATATGTTGATGCGAACCACATCTTACTTGCTGCTGTTTCCGTCTCTG
AAGTGTTGTCAGCTTATTGTCTTAACTGTTTTTTATATGGAAGCACGGGTGTTAGCATAT
GTTCCTGTCCCTAACCTGTTCTGGTCACAAATATTGATTTCAAATGTTCTTTTCAGTTTT
GTTGAGAAGACAAAGCATGTGAGATTGATGTTTTAAATCAGCGAGGGGACTTGTGTCTTC
GTCATTGTTCGTAACGGTAATTCATATCTATCTTACGGTTACTTACCAATGTAGTACTCC
TTCTTACACTATATATAATCTTGTTCGTAAATAATTGAAGCTTCGTCAAGAATAATTGAA
GCTTCAGTAGCGACGCCTCCACCGCCTGGAAGAAGAAGGTCCTGGTCTTGTCGCTGTTGC
TCTTCTGCAAGTTGCTCCTCCTCCGCCCGGAGCTGCTGCTGGTCGTGGTGGTGGACGCCG
GCTGTCGCTGCTGCTGGTGGTGTTCTACGCCTTTGCTTCCACCGCTGCTGCTGGTGGCCA
ACGCCGACGCCCTCCGATCCCCGCCATTGACCCCCGAGGCATCCACCTCTGCTTATAGAA
GAAGAAGAAGGTAAAGTTCAGTTAAAATTTCACGTTTCAGGTTTCAGGTAAAGTCATCAC
TATTGGTTTCAGGTTTGGGTTTCATTTCAGTTGAGTGTTAATTAGTTTTTTCCCTTTCTG
GATGACAGACAGTCATCGATTGGTTTGTTGCATTAGTTAGTTTCCTCTCCTGTTATCTAA
TAGGAGTTTTTGTTGCATTATCATCCATTGAGGCAAACTGTATGAGATGAGCTCTTCTTC
ATGCCAGGATGGGATGAAATTGCGAGGGCTCACGAACTGCACGTGGATGACCTCCTGCTC
TTCAAATGCACTGGCAATGGCTTGCCCAAAAAGAAGATCATTTGAGCTCTAGCTTGCTGC
TCTCTCAAGCGACGCCGAACAACTTATTTTCTTCCTGACCAAATTTCTGAAACTGAAACT
GAAATAGCTCCAGGCCTGTTAAAATTTCTGAAACTGAAACAGCTCCGGGCCCTGTTAAAA
TTTCTGAAACTGAAACACCATGTACAGGTCGTTGTACTGTGACGACAGACACACCAGCTC
CAGGTTCCTGATGATCAGAAAGGAAACGATGCTGTTAGCCCTCAATTCGCAATCAAGGAA
AAGAAACTGATTTGCTTACAAAACCACCTAATTTCTCATAAACTGATTTCATCATCTACT
TGTTATCATCAAAACTGACCCAACAATAGATTCAATGAGATGCTGACGGAGGGAGCAGCA
TGGACGTACTCTTCGGAGGACGACATGGAGAACGGCATGGAGGACGTCCTCGGGGTT