morexGenes - Barley RNA-seq Database

Contig contig_1834264

Source Contig contig_1834264

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1834264 (1747 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_1834264

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_27465	1	949 bp	MLOC_27465.1	Available	Available	LOC_Os04g31900.1, FRAME:-3, EVALUE:1e-14, 13104.m03048 protein calmodulin-binding transcription activator 4, putative, expressed

CDS Structure of MLOC_27465

Contig Sequence (1747 bp)

>contig_1834264 1747 assembly3_WGSMorex_rbca.fasta
GGGAGCAGATACTCCACGTCCAGAAATAAAAGCAATTTTCTCAAAATCAAGGATATGTTC
TTACTGGGTGGCTTATTCGGTGGCTCATGGGTGATCTGGAGCTGCTCATGATTCAACAAG
ATATAGTAGACTTCAGAAGGCTTTAACCACCTGCTCTTTGCTTCTCCGAGAAGCACGTTG
ATGTCAAAACCTACGAGAGGAAGAACTGGAAGATAAGACAAAGTAGTAGTTGGTTTTGTA
CCAGGCCCAAAATTAAGGTAACCTTTAGTTATGCATGAGTTGAAGCAATGGATCATTCTC
TCCTCGAAACAATGATGCTATATAAAGCTGGGAAGTCAAGCATGATCCAATGTTCGCACA
AGCACAATGATATGGTGAAGACCAGGATTACTGAAATCCCAAGACAAGCGTAGTGCCACC
CAGCAAATCTTAATGAAAATAATAATTACCCTCCAGAAGTTTATATTCTACATTTGATCA
GAACTAAAACGAAAATATTTAAGACTTGGAACCCTAGGTCATGCCGTCATGGAAAACAAA
GCTGATCAAACCGTGTTGAGGAAAAATTGAACTCTTCTTTGATTAAACAGCAGTAGCAGT
TACGACCATTGACCTTGTTTATATTTTTATTGCAGTTACCACCATCGACCTTGTAAGAAT
TAAAAAAAAAGAAAGATAAAACATGGCCCCGGCTACTGAAAAGGATCGGCTGCAGACCAA
ATTTGATCATGGCTGCAATAAATATTAGAAGGCCCCAAGAAAGAGGAATTCCAAGGTGAA
ATGCCCCCACACAATAAGGCCCCCTTGCTACTGCATCAACCTTAACAAGCACTCGACTCC
CGGGTCAAGAAGTCGAGTCCCACCCAGGTCAACTCACAAGCCCTGCCAAAGAATCAAACG
GAATAAACGATGAGAGAGCTCCACTCACTCTGGCTCATGGTCGCTTGCGGAGATCCGGCA
CCGGCAGCCTCGAAGCTCTCATGGAAGGAGGGGGCTCGACAAGAGCTCCACGAAGTGGAA
GCCCCGCCTCCAAACAAACAAGAACTGAAACAGTAAGCAGGCAAGGGAGTGAAGGCGCTG
ATGCTGCTTGTGCTTGGACTTGAATGGGGAGGTAGGACAGCACAAGGGTTCTTTCCCAGA
AAAGTGCAACAGCTGGGACGCAGGAGGGGAAGGGAAGTTGCTGTGAGATGGAGTGGGGAT
CGGCTCGGCTGCTTCCTTCCGTTCCGCTCCGTGATTCAAGAATCAACACGGAGAAGGAGA
CCCGCTGTTTTGTCCCCATGTGTTGTCCACCCGAGGTACTGTCATCGAATAAAGTGGTGC
TGCGTTGTATGAGCGCACGTGGAAATTCCATACTGCCAGGAACCGTGCAACGCCGACATC
AGCCTCCGCCCGGAAATAATTGTGATATAAATAATAAATGTATCTCTCCCTATTATTAAT
AATTAATAATAATCTCCCCTAATAATAAAGCGCCGATCGCTTCTGTCGTACGTCGTCGGC
AGTTTTGCACAAAACCCCCTCCATTTCTAGATATTCAACCCGCAGTCCCTATGTGGATGT
GGAAAAAAAAAACGTTTCCTCTCTCCCTCACTCGGTCTCCCTCTTCCCTGCTGCGAGGCT
GCCGCCGTCGGTCACCTCGCGCCCGTCTCTGGCCAGATCCGAGCTGGAGCCGCTCGGATC
TGTTGACCCCAACCCGGATCCACCTCGCCCCGGCCTTCTCCGGCCTCGCCTCGCGAGGGT
CTGCGCT