Contig Data
morexGenes
Links



Map Locations of contig_181127 (2055 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_181127

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_27170 1 510 bp None Available Available None
MLOC_27171 1 900 bp MLOC_27171.1 Available Available LOC_Os04g28820.1, FRAME:-2, EVALUE:6e-14, 13104.m02732 protein retrotransposon protein, putative, unclassified, expressed





CDS Structure of MLOC_27170






CDS Structure of MLOC_27171






Contig Sequence (2055 bp)

>contig_181127 2055 assembly3_WGSMorex_rbca.fasta
TGAGTGTATATATTTGTTTGTATTGCCTAAGAACATATATGTAATTGATAACCTTACCGA
TATCATCGTTGTAGATTGATTTTACTGCCTCATTTATTTCCTTAATGCTTGCTTCTTGCT
CATATATTACTCCATCATCACCTATTAAATAATTTATCATCATATATTAAATGTTTTTAT
AAAAAAGTATTAATGTGCAATTAAAAAATGATCATCGTTGCATAATGGTTGTATTCGTGC
TTGCACATCTTTGATTGTTGCAAGATTTGTGGTGGGTATGTTTGGCCATAAAGCCACTTT
CTGTGATCATCATTGTATAATGATTCTATTGGTGCATCTGTTTCTCTGACGCTTGGAAAC
ATTGAGGATGGTATGTCTGTCCAGAATAGATGGTTAGTTGTATAGACATATTTGTATTTA
CTTGCAATGCGAGTATTAAATCAGGATTATTACCGTAAGTCGTGACTTCTGGCTGCTGTA
GAGTTTGATTGTTTTCATTGCAGTTTTCCGTCGTTGTAGCATCTTCTTTTGATGACATGG
AAATAGTTTGTTTCCGTCTTTTTGTGAATTCTTCGTTACGATGTTGTAGCAACGCTTGCC
TTTTTCCCGCTGGCACATGATCCATGTGTTTAGATGTAAATGTAGAAGTGCTATCATTCT
GTTCAGTTGCGACATATTCAAGGTTCTCCATTGCTATTGAGTCTTTGGATGGTGTGTTCC
GTATCATTTGACGGCGAGCTTCTATTTGTTTAAATCTTGCTTTCTTCTTTTCTGGTTGCA
TATTTGCATATCTTTGTTTTTCTTGTTCGATTTTTGCTGTCTTTGTTCAATCTTTCTTTC
GTTGATAGGCTTCACGGCGTTTTCTATTTTTCTCCTGCTTTTCTTCTTTGCTTGTTCGTT
CATACCGCTCTCTAGCTCTCTTTCTTCTTTTTTCCTTAGCATCCATGATTTGAGATTATG
GTCCAAATGTTTTCATGCATGAACAAAATAAACATTTGTAATGCCGAACATGATATTTTT
TGAGTGCATTGAGGGTGGGGCCAAGCCCGTGTCCGCGGAGAGTGATGGAGAATAATGCTT
ATACATGTTGAAGTATGTCATATATGTAAACATTTAACAAAAATACCTGATGTAAAGTTG
ACTTGCCAAACAATTCAATTGAACCGAAGGCAGTAGCACAAGGCCACGTGTGAAACTGAT
CCTTTTATTCAACAAAGGCTTGGTATGATCTGTTGATTTGTAGCACCAACGGTGCAGTAT
TTGTAGAACCAAGTATAGATTGTGAAACTGATTTTTTGGCCTGTTGATTTGTAGCACCAA
TGGTGCAGTATTTGTAGAACCAATGGCTGGAGAAACCGACTCGTATACGGCTAGAGAAAC
TGACTCGTACACGGCTGTAGACACGGACACGGCTGCTGACTCGTATACGGCTGGAGACAC
GGGTTTTTGAAACTGACTCGTATACGGCTGGAGACACGGCTGCTGACACGGCTGCTGACT
CGTATACGGCTGGAGACACGGGTGGGAGATGGGATTGGGACACGGACTGCACGCATCGGT
GGACAACGGAGGCGGTGGTGGGCGAGAGAGGAGGGAGGCCGCCGCTGCACTGCTGCGCCG
ACGCGGACGCCAACGCTGCGTCGTCCGTTGCCATGGCCGCCGCCGCTGACGACGACGACG
ACGCCGCGTCGCCCATCCTCACGCCGTCGTGGCGCCGGCCAGATAAGAGGTCGTCAAAGA
GGCCCATCGCGGTGCGTGGCGGCCGGCCGCATCGCCCGTGGCTCCGTCAAGCGCGCGCAC
GTACGCCCGGCCAAGGCGGCAAAGGGGGATCGCGCGTGCCGTGGCGTGCTCCGGACGCGC
TGCCCTTCCCGGGGAAGCACAACTCTGTCGGCCCGGAGTCCACGGTGCCCGAGCAGCAGC
AGCAATCGACGCAGCAGAAGCCTTGAGCTGAAGGAGTGGTCTCCATGCTGTCCTCGATCG
AGGTTACTTACATGTGGAACTACTTACTACGTACGTGCCTGACTGACAGGGCCGTCTCCA
AAAATTTAGGGGCCC