Contig Data
morexGenes
Links



Map Locations of contig_180388 (2685 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_180388

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_27070 1 133 bp None Not available Available None
MLOC_27071 1 616 bp MLOC_27071.1 Available Available LOC_Os06g05880.1, FRAME:-2, EVALUE:5e-20, 13106.m00583 protein profilin domain containing protein, expressed





CDS Structure of MLOC_27070






CDS Structure of MLOC_27071






Contig Sequence (2685 bp)

>contig_180388 2685 assembly3_WGSMorex_rbca.fasta
ATACATTTCCTTACAGAGGAATATAGCAAAAACAAACAGAATTACACAATAGAACAATGG
CACATCTGCTACTGTCACTACAATGGACTTCATTCCACTCTCCTATGAGACATGCTCGAG
ATGCGACAACTTGTCATCCTACAAGTAGACTCTTTTGCAATCATCTCTATCCGAGCCTGA
AAGAGCAGCAAGTCCCATTTTATTTTGTAGAGAACCTGTACAGGAGTAAGAAATGCAAGA
GTCAAATAAAATCCATCAGCCAGTGAACAAACAAGAAAGCTACCAGATCTTCAGGAAGTA
AAACAATTAAACAGTCACAATTTATAGATACACCAACATCTATGAACCTAATCTGCACTA
TGGGTTCAATGCCATCAGCATCTCCAGGGTTTATAGGAGAAAAAGTGAACGACAGGCAAA
ATATTCATACTTAAGACTGAAAAACAAAGATAGATGCTGTCCTTAGCAGAATCCAGACCA
GCGAGAGTTGTATGCGCATGACTTAGCACAACTCGGAAATTGCACTAATGACAATGTAGC
AACTGATCCACTAATAGATGGTATGCATGCAGGGAAATATAGAGCAACTACAAGTCCTTT
AGTCTACACAATATACAACCACTAATAGATGGTATGCACGCAGGGAAACATAGAGCTACT
GCAAGTCCTTTAGCCTACACAATGCAGGGGAAGGAAAAGTGCATGTACGAGCTAGTAATA
GATACAAGGCTTGTACATGCTATGGTGTCACAATTTTTTATCAAGCAGCACGAGTTGTCC
TGTTTACAATGGATGATGCGTGAGAGCATTCATCTGATGAACGCTCTTGCATTAATTGTG
GGGTAGAGCGGTATAGTAGCTCCTACAATGAGGTTTAGTAACATATTATTCATAAAACAA
CCGGTACCAACTGAGTAAATTAATTCAGTTTGCTGGGCAAAGCTAACATGAGTGGTTACA
GAGAAGTCACAAAGCGTTGATGGTTCACGGGCAGTAGCTTTCGATAAAGAAATGTACCTT
CTTTCCTCGGATGACAACCCCAGGTTCACCTTGGATGACCATGTACTTTGTGCCTCTAAG
GAAAAGACCAGTTTGTGCAAGATGTCCGGGTTCGTCAAAGTCTTTAATGATGCCAGCAAT
CTCCTCAGGCTTGAACCGCAGCATCCAGAAGCAGAAAACAAGGGAAAGCTCAGATAGGGC
AGGCAAAGCAAAACATAAAACAGTCATAATAAACACATTGTCCACACACCACAATAGGCT
TTCATGGTGAATTGAGGTGTCTTCTGAAACAAGAGTATAGTTACTACTAGCACCATACAA
CACAATGATATCATACGGCGTGATTTAACCAGCAGTCAAAGTTTGGACAATGTTTGACCA
ATACGAAAATATCACCATCAACCCAATCAAATAATTACAGTATGAACATATTTTACGCCA
TGGGACTAGATGTATTGATTTGGTATTGTAAATGCTCATGTTTTTTTATAAACCAGGTTA
AACTTCAGGAAGTTTGACTTATGACAAAGCTAACACGTGAAGGAAAAAAATGGAGACAAA
TGTCTATTCTTAAACTGCACAGTTCAACAAGCAATTTAAGTATTTTACACCATTGCATGA
CTAAATATCAAAACTAATTGATAACAGGTTTTATAGCTAAATTACGTTCACACAAGGAAA
ACAAATGACCCCTGGAAGCTAACCTGTACACCTTTTACTTGCATCTCCGTATTATGCTTC
TGAATATTTCTCACTCGCGATGACCGGCATGTTCTTCGATGAGCGTTTTACGGTATTGAT
CTAAATGTTTTGTGGTGGCCTATGAACTCAAAAATACGCTTGGTCGGCATGCCTAATAAT
TCAGCTAATTGTGCTGTCTCCGAGCAATGAGCGTCAGCAGCCTGAGGTTCGAGCTGTTTG
CAGCCACAAATCTTAGCGTGCAAAGGTCTGCAATATTTTCTACATAGAAAGCGATGCAGC
ATTGCCAGGCCCAGTCGCCAACGGTGGTGACGTGCTCTGATTGTGCAGGCATGTCGACAG
CTTCTTCCTCCCTTCCTCCGTCGCTTTGTTGCGTATGAGCGCAAACATGTTCATTCGCAT
TCTCAACGGCAGTCCACATGGTTCACAGTCTAGTCACACATTCACATTTCAGCTTAATAT
GAGTAAAAGAATCACCAGACTCCGCAAGTTTTTTGTTAGAAAAAAAACTCCCTGATATAT
CAGATCAAATTTTGATTGTAAAATTGACTAATAAAATATGAGTAACAAAAAGTAGTACTA
AACCACGGAAAACCTCCCTAAAATGAAAACTCAATAACATGAATTTTGTTGCAAAAGTTT
GATCCAAAATACAGCGGACTGACAAACCCGGCCATTCATTTATAGGAATGGAAAGACGAT
AAGGAAGCACACTGTATTTGCTGCAGCTATATCTCGACTCAGGATTCAGTTCTAAGCATT
AATGGCGCACATGGCAGTTCAGTCAGTAGCTGTTCTGTTAGATTGAATAGTTATCTGTAT
ATATATTTGTATATTGTAACGTATCCTTGATACACCATCTATAAATATATGTGATAGGCC
ATTCCTAAAGGGTCGAGCCAGTTCCCCTAAACCCTACGTTTAACATGGCATCAGACTAGG
TTAGGGTTTTAGGTCGCCACCGCCTCTCTCCTGGCCGCCGCCGCC