morexGenes - Barley RNA-seq Database

Contig contig_1801349

Source Contig contig_1801349

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1801349 (538 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_1801349

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_27052	1	283 bp	None	Not available	Available	None
MLOC_27051	1	536 bp	None	Available	Available	LOC_Os05g41390.1, FRAME:-3, EVALUE:6e-11, 13105.m04391 protein cyclin, putative, expressed

CDS Structure of MLOC_27052

CDS Structure of MLOC_27051

Contig Sequence (538 bp)

>contig_1801349 538 assembly3_WGSMorex_rbca.fasta
TTGCAGCAAAAGAATGATAACTCCCATGGTGAGACACCATATGTTTTAGGCTTTGTTCGG
TTCCACCAAAAATAAGAGGGATTGGCATGGATTAAATCCCATCTAGTACAAATTCCACCC
CATTCCCCTCCAATCCACCTCAATCCACTTGGACATTGGATTAACCGAACAAGGCCTTAG
AATGATAATTCCCACGGTTAGATACCAGCACGGAGTATAACTATAATAGTACTTCTAAAA
ACTTATTAGCAACTAATCTCAAAGTTAAATGGATTTAGCCCTGCTCATCGCCACTTCGAG
ACGATTAATGCTGTTTAAGTCCCCCTTAATTCAATAGTTAAAAATTACGTATCTATATAT
ATTCTATATCATGAATTTTAATTTGAGGCCTTTTATACAATAGAGAGACAAGTAAATGGA
TCACTCACAGGAGCTGTGGTTCAGCGAGTCCGGTGTGATGCTTAAGGGTTTCTGTCCAGA
TAGGGCTTCTTTTCAGCGTGCACCGAGCAGCGTACACGGCAGACGCTGCCAGCAGCGA