morexGenes - Barley RNA-seq Database

Contig contig_179930

Source Contig contig_179930

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_179930 (2534 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_179930

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_27028	2	2042 bp	MLOC_27028.1	Available	Available	None

CDS Structure of MLOC_27028

Contig Sequence (2534 bp)

>contig_179930 2534 assembly3_WGSMorex_rbca.fasta
ATATTTTAGGGTGGATTTTCAATTACAGCCAGAGAACAACAGAAATAGCCATATACGTAT
CACAAATGGGTTGACTTATCTAAAGAAGGTCGGGCAAAATAGAGTATCAATTATCAATTA
TGTTATGAATAAGACAATCATCCAATTGGATGATAGAAAATTTGCATGTATGAAGAGGTA
AACTGATTTAAGGGCTGGAGAATTTAAATAATAAGGCGTGCTTCCATGCACACCATAAAA
ATTTTGTTCTTCGTGCCTACAACCAATCTGGGATGAACATACAAAAGAAAACCACACATC
TATATATTATTTATTTTAACAATTTCATTAAGTATAATAGAATTCATCCGACATTCACTT
AAATAATATGTTTGAATGTTATATTATTTAAGGGGGCAAACCAACGAACACATCATAAAC
TTATTGTCAATGAAGGTATCTTTCTGTTCTTCCATTTCCATTTCTACACTCTACTAACTG
TGTCATGCTAAATGCATGTACCACGTTGTACTTCTAATATATATGAAATAATGAGAACAG
ATTGTTGTTGCACTGTCAATATAGAATTGATAGTATAATGCTCTTAATGTGGAAGTACAT
AAATATCTCCCACAAAATTGAAATGAAGAGAATGATATCGCGATGAAACCATTTATTTCT
GCTTTAAGTTAATCATTCAGTTGAACCGCATAGGATGTGGACATATATTCAGTACATAAC
CCAAAAATAAAGTGCTGCTAGAATTTGCACAAAACAAAGAAAAAATGAGGCAGAAGACAT
TGCAACAAATCATATTAGGGGAGTTAGCCGATAATATGAAACAAAAATTAATTAACCATA
ACACTGTACTTGAGAATATACAGTTAACATACCATAAGTGATCAGACTAACACGTAGTGC
ATTTGGCCCGGGTAATTAAAGCTTATGTTCTTGATATATTATACCTTTGTTTGCTCCTTA
TTTTATGAATGATTGATTCAGTTTATTCAAAATAAATAATTCTAAAGATGTCTCGGATTT
CAGCATAGATATGCAAGAAAATGGCTAGGGCACATTAATTGGCCACCATACTCAGAAAGG
TTAGACTGTCTATACCATAAAATACCATTGTGCAATTACACATAATACGTGCAGATTATA
AAAGGCGAATAGAAACTCATAAAGATCTTACAACTAAACTGGGAGATCTCCTTTATTCAA
AAATAGGTACCTGCAGCTGGGAGTCGTGCCAAAAAACAGGCCCTTGTTCATCAAAATCAA
GGCTTACACATGTCAGAATAATCCTAGCAGCAAATAAATCATACAACTTAGGAAACCAAG
AGTATACTAAGTATAATATTCTGATAGAGAAGACAATGAAGAGAAGAACGAAACTTGGAA
AGAACCACTGAAAATGCTCCAAACCAAAAACTATTTTGGAGTAGAATCTGAGAAAAAGAA
ATGAAATCCAAGTATGAGAAAACAGATGTTTCTTCCGTTTACTCTTGACCGTTCCTTCCA
AAGAGCCACCATCTGATTTCACTCAAGCACACTTGATGTGAGAAAATAAATAAAACATAA
TAATTCTGGAGGTTAACTAATTTTTACAACAAAACATAAGAGAGCTTTGTTATGTCATAG
ACAACATAGTCAAGTTGTTGCTACTTGAAAGGAAAATATATATGCATGGTAGGCGTCTTG
TTGTGGTTGCAGGCCATGCTGATCTCAACTCGCAGCATGTTCCTAGACCTTCCTTAATAA
ATTGTATGATACATCTGCAATTCAAACCCATAGCTATGACATGAGATAACAGAAAAAAAT
CCTCTGCAGTTCAAAATTCGTAGTAGAAGTAATTGTAGCATATGAGCTACCTTTTCCTTG
TCCATCTCCATGGTCTTTTCCTGCAGTACACTCAGGTCCTGAACGCCCAATAGCTAGATC
GTCGTCAAACGGTGGAGTCGTCAAGAGCTTGTTCCCAACATGTACGTGGTCATGACTGTT
CCGGCTGGGGCGTTGCCGAGGTAGACCCTCAGTATCTCAGACTATGGCGGAGGCGAGGGC
CAAAAAATTAAGAAAACACACGGATCAATGCCCTAGATTGTTTTCTTGAGTTTGAGCGAG
AGATAGATTGAGATGGTCGTTGGGCATTGGGAGACAGATACGTGAGAGCTTTTTTACATG
AGAGTTTGTTACATATACGTGAGAGATTGAGATTGAGAGACTAAGGCCGTGGGAGAGAGA
CATATGTTTTTTTTCCTTCGTGGCAGAGAGATACATGTTTTTTTTTCATCTCTGAGTTGA
TCTACACCGTAATAATTCGGTCCCACCAGATTAACGGCTCGTAAAATCTAATTAATGTGG
TAATTTGTAGGGAGTCTCAAATTAGTATAGGTAGGTATAGATTTCGATCTAGTCTCCCCT
AATAATAAAGCGCGGAGTGCTTCTGTCGTCCGTGATGGCGTTTTTGCAAAAAAGTCCCTG
TCGTTTCACGTAATTAACCTGCAGTCCTTCTATAAGTCGGCTCGAACCGTTTTTTACTTT
TTATGAAAACCCCC