Contig Data
morexGenes
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Map Locations of contig_178945 (7984 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_178945

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_26912 9 1974 bp MLOC_26912.5 Available Available LOC_Os01g21630.1, FRAME:+1, EVALUE:0.0, 13101.m02300 protein pectinacetylesterase domain containing protein, expressed





CDS Structure of MLOC_26912






Contig Sequence (7984 bp)

>contig_178945 7984 assembly3_WGSMorex_rbca.fasta
CGCGGTGTGAATGTCGCGTGGTGCCGCTCCGGCTCCCTGCCCGAGGTCGGGGCCGGCTAT
TTAAGTCGGTCGACGCCCCAGCCCTAGCTCATCCGCCTCCTCCTCCTCCTCTCTGCTACC
ATCCGAGCCCGTCCGCCTCCTCTCGCAGTTCCCTCTCCGTCAGGATGGTCCGACGGCTCA
TCACCACCTACGCGTAGCTCACTCCGGACCGGCGCCTTGAAATCGAGGCGGAGATGAAGG
CTCGTCGCGCCGCCTGCATCGCTGCGGGTCTCCCTCCGGAATCGTCGGAGACGAAGACGG
AGGAGGAGAAGGAGCAGCCGGAGGCTATGGAGGAGGATGCCCCGGGCTTGAGCATGGCGG
AGGTGGAGGCGAAGTTCGCCTTCACCCAATCAGAGAAGATGGCGGAGCAGCAGGTCATCC
TGGATTCCATCCGGGAGGAGGCTGAGGTGGAGGCCAACCGTCGACTCATCCGACAGAGGC
AGGCGGAGGTCGTCGCCCTCTTGGACGAGCTGGACACGGAGATTGAGGCGGAGGATGCCG
CAGTGGAGCAGCCGGAGGGGCCGGAGCTGCGGCAGGCGGCCATTTATCCGCCGGAGGGTA
CGGAGATTGTCGACATCTCCGACGAGGAGTAGATGGGTTCTACGTAGTACATATGTTTCA
TATCTTGCATGTTTTTGTATGGATTTGAGGATCCTCATATGAGATGTCCGGATGTAGAAT
GCATTACTTGAGACGTGACCAATCAGTATGAGAGGTTAGATTTGTAAGGTCCGGATGTAG
ATGCTCTAAGTTTAGGGATGTGGTATAAAGAGCTAAGTTACAGGGGAAGAGCTAGAGATG
CTCCAAGGAAGAAGACATTGCCGGGAGAAAAATCAGGGGGCCCTCTGCCTCTTCTTTTAT
TTCTGTTACATTTAACAAGTTTAGCCCCTAGAGACCTTCATAATTACATCATCCGGCCTG
AAGTCTGTATGGAAAACTAACAAAACCTTGTCTGAGTTCTTAATCCTAATCATGAGGTCC
GAACTGGCCCTTGCTTGCAAGATCTTCTTATATGATGTGGCGGCATGTGTTGTCGCAGGG
GTATGGGCAATCGATCGCCTTCACTTCGGCCCGGCCAAAGTACCAATCGCCGACAGATTT
CGCGATCCTCTGTATTTGCAACGACCACAGAATTTACATGGACCGTCAATGAAAGTGTAA
AATGTGTAAATGCTGATGAGACTTATGTTATGTATTGTCGTACCTTGTTCTGAATGGCAG
GTGTGCCATTCCAGGTGGCTGGCAGTTCGGACTGGCAGTGGGAGAAGCACGAGTTTATGA
AGAGCCCGTTGCTCTTGGAACCGGAGAAGACCCTCACAGACGCCACCATCTGCTCCCTGA
AATCTGGAACATACGAACAAAACTAGTGACTCAGACTCAGGAGTTGTCCAGATCCTCACT
TCACTGAAATGAGTATGTGTTTTTCCTCTAACGCAAGCCGCGCAACGGCTTTCGTGCTAG
TTGCTCAATCGGTTAGGTTTGGACTTTGGAGTAACGAGTTGGATTAGACATCGCAGGTAT
GAATTGTTCGATCGTTTACCTTGCAGGAAGTCTATCTGAGACGCATTGCAGGCCGAGCGG
TTGAACTTGCAGGCTCGCCAGGCGCGGCTGGGGTCAGCCTTGTTCGGGGCCAGGCTTTCC
TCAATCTGATCAAGTTTCCGTCACATTTGCTATCTTCTTGCGAAAATTATACTGATTTAC
CTAAGATAAATCATTATTGAGCGTAAAAACTTGATTACCTGCCAGACGTCGTAGGCTGCG
TTAAGCAAGAAGATAGGGGTCTTGATGCTGTCGATTATATTCTGAGGGAAGAAGCACTGC
AGACGCGCATGCATGCAAAAGAGGCAGCAAGGCTTGCTAGCATCAGTTGAGAGGGACAAG
AGAATGATCTTTCTTGCACACAAACTAACTAGATCGAGCACGCACGCACCGAGGTGGCGT
CGAGGTGATCGGTGCAGGTCGGCGGGAGGTGCTGAGCCACCCCCTGCATGGCTACAATGT
CGCTGTAGTATGATCTCAGGCTGCGGCCCCCGGAGACATCCACGCTGCACAAGCAAACCA
TCCATCAACTGGGTGAGGCCGTGTGGGTGACGGTGATATACTTCAGGTAAATAAGTATAC
AAGTAGACGTACGCGTCGAGGAAGAGGCCTGCGTCGGCGAGGCACTTGACGGTGGTGCTT
CGGCCGGCGAAGAAGGCGCCGAACTGGTCGCAGTGCAGTATCGCCGCCAGCCCCCCGGCG
GAGCAGCCGGTGAGAAGCGCCCGGTCGGCCGACGCCATCCCGATGGAGAGGAGGTGCTGG
ATGGCTTCCTCCCAGATCCGCTGCCCCCGGAAGTAGAGCCCAGTAGCCTGCATCATATTC
ACAGAGAAGAAAGCTCATGCATAAGATAAGAATGTACAGTATGATGGTGACAAATCGTTG
CGTGTAAGGAATAGTTAATGTGCACTCCGCTGCTAATACACCTCGTCGAAGGCGTCGCCG
GCGAAGGACGCGCTGTCGCAGTAGCGGATCTTCACCCGGTTCCAGTTGTGGAAATCTGCA
AGAAGAACGGACACGTCGATCGTCGATGGCGTGCGTTTCCTCCGTCGCAGGTTAATCACG
TTGCGTACTGCGAACACTGTGAGTTGGAGGAGGCGAGAGAGGCGGACCAGGATTGTCGGC
GGGGCTGGCGCTCATGATGCCGGTGAAGGCTATCTGCCGCTCCATGAAGTTGGAGGAGCC
ATGGCGGCTCCTTGTCCGGAACTTGCACGTCCTCGCGTTGTTGCACCACCCGCCTCCCTG
CAATCACAGTGCGTTGATGCATCAAGGATCAGGCAAGATCATGTATGCACCGCCGCCTAA
GAGAACGCACCTCGAGGTTGACGATCCAGCTCTTGTTCCCTGCCCCGGAGCCCGGGTCCA
GGTGGTAAGCCGCCGGCGTCCCATCCATGCACACTGCAATTGTATATAGCAAATCTCCCA
TGTGTTTACACTTTACATCGGATTTAGACAATATCACTCGAATTTACCCGCAAAAAATTT
TACCACTCAAATTTCTTAGGCTGCTGATTCAATAATCTTCATAAAAAAAAAAAACACTGA
ACACACCACCTAGGGCATCTCCAACGCAGATCACAAAACGAGCCTCATCAAATGTCCGTG
GACACGTCACAACGTCTTTGTGGACAGTCTGACCATCCAACCATGTCGGTCAAACTCGAA
CTGTGAGTTATGACTGACAGTGAGCTAGGTGGACCAAGAGGAGAAAGAGATAAGTGGAAA
ACATGGGCAAATATCCGCAGACATCTCACAAAGTGTTTGTGTATAATCTGACCATCCAAT
CGTGTCCGTCACATCCGAACTGTGAGCTATGACTGACAGTCGCAGGCATGTCACAACGTC
TTCGTGGACAGTCTAACAATCCAATCGTGTCCGTCAAACCTAAACTGTGAGTTGTGAAAA
CATGAGTTGTGGGTTAAAGTGGTCCAATTGACAACGGGTCGGGTGGATGTCCAGACTCCC
CTAAAACTACCCCGGTTTGAGAACGGTTCATGAAATTTTGGATGTATGGGCCTGTTTAAC
GGTGGGTTGAACCGTTGAAGTGGTACACTTTTATAATTTTTTACAGAAGAAGCACGAAAC
AACGGGCCAGCGCCAGAATTTTGCAGACAACTGTTGATGATCTACAAGACCAAATTCTCC
ACTGCACTCTACATATGGAGGCCCCCAAAATTCTTGCACTCGCTAGCTATCAGCTGAATC
GATCAAGCAGATAAGATACCATTTCCCATAGCACACTACACAACCAAGGCCGCGAAAACT
AAAAAGAGGTGCAGATGAACAAGAAGAAACGAATAATCATTCATGCTTGGACTTGGACAT
GGACATACCGGCGCCCTTCTCGACGGAGGCGTTGAGGAAGGTGATAGGCACCATCATGCC
CGCGACGGCCGCCGCCGACCGTCGATGCGTCCTCCTCCTTCTGCCACCGCCGTTCTTCTG
CTCGCCCGCCGCCTGCACGCAGGCGCAGCTGCCGGCGAGGAGGAGGACCAGAGCGAGAAG
CGCCCAAGGCCCGACGGCACCGATCCTCGTCTTCACCATCGTATCAATGGGCTGCTGAGT
AGAAGCAAGATCGCCGATCGATATGAAAATCCCTGAGCGACGTACTGTATATTTAACGAG
CGCATAGCAAGGGAGTGACGCACCTATATTGCTACAGATAAATAAGGAGTTAATCAAGGC
GAGATTCCTAATCAATCAATGAGGAAATGATTAATATGCTTCCAAATATGGGTGCGTGGG
TAGCGTAGGAGTACTCCGTAAATCCACATGATAATCACATGCACGCATTCGATGTTTGCC
AGCGGACTATTTCTATTTGGGTGTGCAATTTGGCCATCAGGGAATCAAACAAGGATGAAC
TTGGGCATTGCCAGCCAGGCGTATGTACGAGGGTGCATATGAATATGATTGGATGTTCAT
ATGTACGTATGTACCCTGGCTCATAAACGGCGAGAGAAGAGAAGAGAAGAGAACATGCGC
ATGTACCAGCAGAATCCATCAGAAAGGACGTACAGACAGCCGCGCGCATATATACGGCTA
TCCAACATGCGGCAAAAGCGAATTTCAAAAGAAAAAACATGCGGCAAAAGCGAAGAGGTA
ACGGCACGCGCATCGCGCACGGCACGCGTGTACGCATCTGTTTTCATGATGGTCGTATAT
GCGTGTACGTCTGCCTAGCTGCCGGTTGATTTCGATGGCTCACCGGCATCCGTAAATCGG
ATCCGACCCATTACAGCGTGCACTGGCTGTTACGGTAATATGCTTTCCTCTTTTCTTTCA
TATAAGATCAAACTTTGGCCGAGCTCTGCTATGGTCGGGCAACGGAAACTTTGGCCGACT
TGTATGGCCCCCATCGACATAATAATTGTCATTATGGTCATTTTGTGTTGAAATGTGATT
CTAGCATAGTTGACATGGGTATTGACCGGTATAGTTTATGGAGCTCGCTCCGCATACAAC
CTCGCAACCTTCATATTCGAAAGTTGGGATCCGTAAAACAACCGTCGGTGTGGGATAAAA
GTTTCGGCTTCTTCCCTCTTGCGCCATAATCGGGTTCGAAGTGCCACGTCGTCTGTACAT
ACATCTTCATGTCCCGATTAATCATTGGCAAGTGGCATGACCGTGAATCCATCAATGACC
TTTGCCCCTGGTCCTCCCTCCCCCTCCCCCCCTTCTGGTCCAAGATAGTCGTTCGGATGG
CCACATAGCCTCATCCCGTCTATGAAAGCCACGCGGATAGGTGCCCTCATCATGAAAGCC
CTAGCACCCCCTCTCATCTCCTCCTCGTTGCCTCCTCACCTTTCATCTTCTCCTCTCTCA
ATGACATTGTGGTGCTAGGGAGACAGTGGGAGGCAATTGGACATCGAGAGACAGTGGGAG
GCAATTGGATCCATGACAACCTCTCGGATCTCTTTCGGAAAATTATTGATTCCCTGTGTA
GAACTCGCCCCATCCTTTGGGTGGTGATTAGTGCGCTAGTCTGGATGCTATGGAATGTGT
GCAATAAACTTTGTGATTGAACATGTGATTCCGCTTCGGACGACTGACGCCATTTACAAA
ATGTGCGGATTCTTGCAGCTCTGGCGACCGCTTAGCAAGCGGCGTCATCGGGACGGCATC
AACACCATCATCGTCGGACTTCACTCCACCGACATCTCCCTCGCGCCACCGTTACCTCCT
CCACCCCCGGAGCCTGATTAGTTAGTTGCTTTCTTTGGGGGTTTGTTGTGATGTGCCTCC
AGCCAGACCTATTTTACTTTTTTTGTTGTTGTTGCCCGTGAACATTGAGCTTGTGGATTG
GTGGTATGCTTTATAATATAAAGCGGGGGAAACCCTATTTCGGTAATGACATTGTGGTCG
CGTTGGGACGCGGCCTAATGTGTAAATGCGGTGACAGAACGAAATGTCTAGTCGTGCAAC
CACGGGCATACTCTCCTCAAAACGCCGCCGGCGATAGATTTAACGCACGACAGACTTGTA
AGGGGGCAACGCCTTAACAACCTTCCATATTTGCTCTTCATGTGCATCAAGATCAAGAGT
ATATATAGTCCCTGTTTGACGAGGCGCGCAACTGCTGGTCAAAGAATTCATCCACCGCCG
CTATCATGTGTTCTTGACCAGTGATCATATTACCATTAATTTGCATGTAGAGGTCATGTT
GTGCCTTCTCGAGAAAGTATCAAGTGATACATGAGCTTAGTTGCTCCCCTGATACGAGCT
TCTGCGAGATGTTGGATCTGAGACCTAATGGCCATCTGCAAAGCTCCTGCAACTTTGCAC
AAAACCCCGCCATGAATCTCAAATTTAAGTGCAAGTCTAGAAACTAGATTGTGACCCTTG
GATCTCAGATCCAACGGCTAGCGGGAGCCCGTGTCACCTATGAGTCGCGTGGTGTGGAAA
ATATTTCGATGTGAGCCTCCATTTTTGTCTCGCGATTGTTCTTTCCAAGGAACATGTCAA
TTTCATCACGCAAAAGTGTCCTAAATTCCATCGCCAAATCCAGCATACAGATGATTTCAA
CGGCCACCAAGATTTGCAAGCGTATGTTCCCAGTCCACCTACTGCTCCAACTAGTCAGAG
CTTTGGCCGTTGCCCGCAACTTAGCAAGCACAAACCTTAAAGCTAAGTTCCAGATCGTCG
ACATCTCCGACAACGAATAGATAAGTTCACCGGCTATCCAACATGCGGCAAAGCGAAGAG
GTAACGGCACGCGTGTACGCATCTCTGTTTCATGATGATCGTATATGCGTGTACGTCTGC
CTAGCTGCCAGTTGATTTCGATGGCTCACCGACATCCGTAAATTGGATTCGGCCGATTAC
AGCGTGCACTGGTTGTTACGGTAATATGCTTTTCTCTTTTCTTCTATATATAAGATCAAA
CTTTGGCCGAGCTCCGCTATCGTCGGGTGACGGAAATTTCGGCCGAGTTGTATGGCCCCG
ATCGACATAATAATTGTCATTATGGTGATTTTGTGCTGAAATGTCATTCTAGAATAGTTG
GCATGGGCATCAATCGGTATAATTTACAGAGCTCGCTCCGCATACAACCTCATAAATTTC
ATATTTGAAAATTGGGAATCCGTAAAACAACCGTCGATGTGGGATGAAAGTTTCGGCTTC
TCCCCCCTTGGGTCATGACCGGGTTTGAAGTGCCACACCGCCTGTACATGCATCTTCATG
TTCCGATTAATCATCGGCAAGCGGCGTAACCTCGAATCCACTAATGGTCTCCACTACCCC
CTCCCAAGACCGGCCCATACATATTTTGGGCCCTGGGGCGGGAAAACCAAATGGGGCCCT
TGTGGACAAAGAAAAATTCAGAATATATTGTATTTCGAGAGCAATTTAGTACATAGTATA
GATTGATGGTGTATGAACTAAAACCACATGAGGTCTTGTTTGTTTTCCTAACACTTCTCA
AATAAAAGTCATCAATAACCACATCAGTATTTACTTCATCAAACTTTTCTTTCTCAATGC
ATATTTTTTCACTTCCTTTCTCATTGATAAACATTTTTTTAAAAGACACGTCACCATAAA
ATTGCATAAAAACATTCGATACAGGGAACAAAAGCACCTGAATATGGGCATATGGCTTGA
TGTCGAATTGTTGGTGTAGCTTCCCAGATGTTGGGGCATAGTTTATGCCTACGTAATTTT
GGTGATTGATGATAGTACCGCAAAGGACTAACCGTGAGTATTAAGATTTCAGATAACACA
CGTNNATGGCACAAGACGACTCGCCCCCTCCTTCGTGGAATAGAAACACGGTGTTCTCTA
CGATTCTCTTTNNNNNNNTCATAGGAAAGCCGTACTATAAAGAGGGGAACCGTAGTGGAA
AGGNNNNNNNNNNNNNNNNNNNNNNNNNNCACACTTCACATATTTTCCCCCTTGCTGGCA
ACTT