Contig Data
morexGenes
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Map Locations of contig_177434 (2662 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_177434

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_26710 1 2625 bp MLOC_26710.1 Available Available LOC_Os01g33960.1, FRAME:-2, EVALUE:2e-61, 13101.m03422 protein transposon protein, putative, CACTA, En/Spm sub-class





CDS Structure of MLOC_26710






Contig Sequence (2662 bp)

>contig_177434 2662 assembly3_WGSMorex_rbca.fasta
GACTGCACTGCCCGCCCTATGACCCAAAACTCAAAATGAGCCTTGCGACGAGACGCGGAC
ATTCCTCATGCTGCGGTTCCCTCCGGTCCGTTCCCGGGTTGGGTTAGGGGAAGATCCGAG
CGATTGCCTTCGCGGATCCAAACGTGCTCACAAGGCGCACAATAAGAATAAGACCAATAG
AGACTTCATAAGGGACCATTTGAGCTGCAGATCGTAATGCTCCTAGAAAGGCATATTTCG
AATATAGAGGACGTTCCCAACAATCCACGAGAATATCATACCCAACTATGAACCGTACGA
GCACATCCTCTGTCACCCCCACCGCGCTTACGGCTCTATACCCCAACCCAACTTGCTCTG
GCCCTGGGTCCTCCCGCATCTCTTCCTCGGTAAGCGGACCGTGGAAGCTGGGGAGTATCC
GCTTGGGACTGATAGAAAACAGCATATCTTTTCCCTCCTGACCCCTATAAAAATCTAGTG
GAAGTCCGGTCGCGTCGGAGACATCTTTATCTGATTTTGAGGCTTCGTCGTCCGGCTCCT
CCAAAATTATGTTAGGATCGGCTGGCTCATCCTCATCATCCGAAAAGAAAACAGAGACAA
AACAGATTTGTTTCAATGACATATCTAATCAGACTGAAATTGATGTCGAAGACACGATCA
TTCACATCAATTGAAGCAGGCAGGAAGGGCGCGGAAGCTACCGTTTAACGAATGCAATGC
AAGCAAGGTAGCTTGCTTACTCTCCATCTAGCGTGCGTTGGCGGCAAGGAAGGAGGCATT
GGAAAGACTAGACCATACACATTAATTAGTACAAGAAAGAGGCATTCGGGAAGCGACTAG
TCGCTTCTGGCGAAGCTTAACAAAGGCCGACTACTACATAGAGACAACTACTACCAGTCA
TGAGCGATAGTGAAGCCGTCAGAGGCAGAAGCTGTCGCTTGACGGACGAAGCCGAGCCGA
TACGATAGGCGGGCGAAGTGAGCGAGACCAAGACGGGCCAGACGTGGAGTGGCGAAGGGG
GCCTACTATACGTATACGTGATTAGTAAGCGGTTCAAGACATCGAACGAAAAATCAAGTG
AACTAATGAACAGTGTGATTGATCAGACAAGTACCAAGGAGCAAGAAAACGTATGCGCTT
TAGCAAGGGATGAGCGCGAAATCCGTTGCTTGTTCTTTCGGTAGCCTTCTTTCATTTCCG
AATTTGCTTGCGAGCAGTCCTTGCATTAGTATGAGTTCGTTGACCGCGTAAGGGCGATCC
ATCTTGATGACGAATTCCACGATAACGAGAAATAGAAATTAATCGTTCGATGTCTGCTCG
TTCTCCCCTCTTCAATTCCCAATGAACAACATGATCTTGAGCTATCATTTGTTCAATTTG
GTCGATCTGATACTTAGTTAACTCATTCATCTTGATGTTCCCACTGATACCTAATCGATA
ACGAAGCTGAATGGCTTTTTTCGGTCCAATTCCATCCATTTTTGTTGAGGCAATTCTGAC
TTGTTCATCGGGAAGTGATCTAGCTCCTGAGATATATGACATTCTTTATCCTTATCTTTT
CCTGGTCTTCTCGGCTGGAATCTACAATCTACACCTCTCCAAACACACAATCTCGATTTC
TCTTCAGCTATGTCGAAGAGATTTACTTATTTGCCGCGCTGTCAAACCTTCCAATTCCAA
TTTCCAATTCCAAAATCCCACCCCCAAAGACAAGCGGCGATGATCCGTACATCGAACGCC
TGTTTTGAGAAGAGGGCATTGCTAGGATGGTTTGATCGAGGGTCACGACCTGACTAGACC
CACACATCCTAGCAACGTGGACTATCCTACTGAGCTAATGAAAGAAAAATGACACGAAGA
TCGACATGAGCTAGACATGGATGTATCAAGCCTTTCCTTATGTTCTCTCATACAATGAAC
CTCGCATAGGAAGGGATTACTTAACCACGTAACTATACCCACTCGGGATAGGTGTGAACG
CATTCACACAATCCGGGATGAATAAAAGGAATATCTCTAGCAAGGGAATGTGCTTTCGAA
CTCAATCGAATTCACAACACTTTTTGTTTTTTAACAAGTGTTACAATACGATGCTTTTCG
TGGATTGGATTGGTTTTAGCAAGGATAGGATTTCTGATCGGATAGGAAACCGAGGAAGCA
GGAGCTCGTCCCTAATAGCGCTAATAATTCGTATTTCATTTATCGTAGGTTCGCTAATGC
GTAGGATGCGTAGGAGCCGATGTCCTTTCTACGGAGCCTAGCATTGGTAGTGGTACTTCC
GCTAGATACGAGAAATCCTCTCTTCTATTACTTCACAAGTAGTGGATAGGTCCCGCCTTA
GACTGCCCCCTTTCTTTCGGGGAAGTACTTATTTACGTAGCCTTTCATGCCCATGCCATT
GCTTTGCCTTCGCTTTTCTTCCTCTGGGCATCAAAGGAGGGCGTAGACCAATATTTAATT
CTAAAAAGCTCTTCATCGCTCGTCCTTAGGAAACGGACTCGCTTCGCTAGCTCTAGGTGA
ATTTGCAAAACAGGGAAGAAGGGTATTTTATTTCGAAAGTCAACCGTTCCCGTAACCAGA
ACCGAACAAGGAAGCAGGGCGTAGACCCGTTACTTCTTACTATGGTGGAGGGGATGCCAT
TATTCCAATGCGTATTGACTAC